Detailed information of component protein


Summary

Component ID T6CP016245
Component protein type TagH
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (695 a.a.); Nucleotide sequence (2085 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29670
Coordinate (Strand) 70545..72629 (+)
NCBI ID 920807630
GenBank LEKY01000074
Uniprot ID UPI00069E6CDD
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 4.7e-16 32..95
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-694 MSTEPSLTLAVQGERAERLAQREQRFDRRDGSIGRADDCDWVLGAEGVSRLHALIRYLNGLYFVEDRSTNGMLLNGAPLRKGDPAALRDGDRLQIDTFEIAVRLGGETGGHWQDRQAQTDRAPTAPASTSTPRVPPAPAVPAAGAAALSSSSSAENREPLDLGALLSPRQLDAQGDAGRPDGLIPGARDAAVPGSSLDPLALFDAPSSYDDEAPGAVPADQGWNHTPSPSDRFRPPRVAGAHPAGALLPDDWDATGSRFTPPSAPSARQWDDSLLAPASNAAPAIPPAASGEGDSLLAPAPLRAAEAAAAMQSSASHQDDARPGSSPARAGGAAPVIPPSGSGEDDSLLGSIPPRAAGAASVPPSSARHQDDSSSDAISARARVAAPVPSPLHPDDSLPRSASVVPAAAQHDDALLDLIPARAADAAPVLPSSAPRHGDSLLAPIPAHAAEAPPLAPGNPAARYQATPATPAAPSAARAPAADAAPSTRAPAAAVESAAPVARPVAFGAAEASPRSQAASPAEPAGADLTAMFEIAVDAMMDVLRARAELKNSFRLPATLIQRSENNPLKFAPTAREAVRRLLAPPDNGFLAGSAALADAADDIRNHQMAMLAGVRSAFESLLVQFDPARIEQESEGGGRRLSLGGNRPRHWERYKEQFEALTRNPDECFRRLFGDEFARAYEQQLARLKQRRP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9835 - -


  Protein sequence: 695 a.a.    

>T6CP016245 LEKY01000074:70545-72629 [Burkholderia gladioli] [TagH]
MSTEPSLTLAVQGERAERLAQREQRFDRRDGSIGRADDCDWVLGAEGVSRLHALIRYLNGLYFVEDRSTNGMLLNGAPLR
KGDPAALRDGDRLQIDTFEIAVRLGGETGGHWQDRQAQTDRAPTAPASTSTPRVPPAPAVPAAGAAALSSSSSAENREPL
DLGALLSPRQLDAQGDAGRPDGLIPGARDAAVPGSSLDPLALFDAPSSYDDEAPGAVPADQGWNHTPSPSDRFRPPRVAG
AHPAGALLPDDWDATGSRFTPPSAPSARQWDDSLLAPASNAAPAIPPAASGEGDSLLAPAPLRAAEAAAAMQSSASHQDD
ARPGSSPARAGGAAPVIPPSGSGEDDSLLGSIPPRAAGAASVPPSSARHQDDSSSDAISARARVAAPVPSPLHPDDSLPR
SASVVPAAAQHDDALLDLIPARAADAAPVLPSSAPRHGDSLLAPIPAHAAEAPPLAPGNPAARYQATPATPAAPSAARAP
AADAAPSTRAPAAAVESAAPVARPVAFGAAEASPRSQAASPAEPAGADLTAMFEIAVDAMMDVLRARAELKNSFRLPATL
IQRSENNPLKFAPTAREAVRRLLAPPDNGFLAGSAALADAADDIRNHQMAMLAGVRSAFESLLVQFDPARIEQESEGGGR
RLSLGGNRPRHWERYKEQFEALTRNPDECFRRLFGDEFARAYEQQLARLKQRRP*

  Nucleotide sequence: 2085 bp    

>T6CP016245 LEKY01000074:70545-72629 [Burkholderia gladioli] [TagH]
ATGAGCACCGAACCGAGCCTGACCCTGGCGGTGCAGGGTGAACGCGCCGAGCGCCTCGCGCAGCGCGAGCAACGCTTCGA
CCGCCGCGACGGCAGCATCGGCCGCGCCGACGATTGCGACTGGGTGCTCGGCGCCGAGGGCGTGTCGCGGCTGCATGCGC
TGATCCGCTACCTGAACGGGCTCTACTTCGTCGAGGACCGCAGCACCAACGGCATGCTGCTGAACGGCGCGCCGCTGCGC
AAGGGCGACCCGGCGGCGCTGCGCGACGGCGACCGCCTGCAGATCGACACCTTCGAGATCGCGGTGCGGCTCGGCGGCGA
GACCGGCGGCCACTGGCAGGACCGGCAGGCGCAGACCGATCGCGCGCCGACGGCGCCGGCTTCGACGTCGACGCCGCGGG
TTCCGCCGGCGCCGGCCGTGCCGGCAGCCGGCGCGGCCGCGCTGTCGTCATCGTCGTCGGCCGAGAACCGCGAGCCGCTC
GATCTCGGCGCGCTGCTTTCGCCGCGCCAGCTCGATGCGCAGGGCGATGCGGGCCGTCCCGACGGCCTGATCCCCGGCGC
GCGCGATGCGGCCGTGCCGGGTTCGAGTCTCGATCCGCTCGCGCTGTTCGATGCCCCCTCGTCCTATGACGACGAGGCAC
CCGGCGCGGTGCCGGCCGACCAGGGCTGGAACCACACGCCGTCGCCCTCGGATCGATTCCGGCCGCCCCGGGTGGCGGGC
GCGCACCCGGCCGGCGCCTTGCTGCCCGACGATTGGGACGCCACCGGCAGCCGCTTCACGCCGCCGTCCGCGCCGTCCGC
TCGCCAGTGGGACGATTCGCTGCTCGCGCCCGCCTCGAATGCCGCGCCGGCGATTCCGCCCGCTGCTTCGGGCGAGGGCG
ATTCCTTGCTGGCGCCCGCGCCGCTGCGTGCCGCCGAGGCCGCGGCTGCGATGCAGTCGAGCGCCTCGCACCAGGACGAC
GCGCGGCCGGGTTCGAGCCCGGCGCGGGCGGGCGGTGCCGCGCCGGTGATTCCGCCGTCGGGCTCCGGCGAGGACGATTC
GCTGCTGGGTTCGATTCCGCCGCGTGCGGCTGGCGCTGCTTCGGTGCCGCCGTCCTCGGCCCGGCATCAGGACGATTCGT
CGTCGGATGCGATTTCGGCGCGCGCGAGGGTTGCCGCGCCGGTGCCGTCGCCATTGCATCCGGACGACTCGCTGCCGCGC
TCGGCGAGTGTCGTGCCGGCCGCCGCGCAGCATGACGATGCGCTGCTGGACCTGATCCCGGCGCGCGCGGCCGACGCCGC
GCCGGTGCTTCCGTCGTCTGCGCCGCGGCACGGCGATTCGCTGCTGGCCCCGATCCCGGCACATGCCGCCGAGGCACCGC
CGCTCGCGCCGGGCAACCCGGCCGCGCGCTATCAGGCCACCCCGGCCACCCCGGCCGCCCCGTCCGCCGCGCGGGCCCCG
GCCGCCGACGCCGCGCCGTCCACGCGTGCCCCGGCCGCCGCCGTGGAATCGGCGGCGCCAGTGGCGCGGCCCGTGGCCTT
CGGCGCGGCCGAAGCCTCGCCCCGCTCGCAGGCGGCATCGCCCGCCGAACCGGCCGGCGCCGACCTCACGGCGATGTTCG
AGATCGCCGTCGACGCGATGATGGACGTGCTGCGCGCGCGCGCCGAGCTGAAGAACAGCTTCCGCCTGCCGGCCACGCTG
ATCCAGCGCTCCGAGAACAACCCGCTGAAGTTCGCGCCCACCGCGCGCGAGGCCGTGCGCCGCCTGCTCGCGCCGCCCGA
CAACGGCTTCCTGGCCGGCAGCGCGGCGCTGGCCGACGCGGCCGACGACATCCGCAACCACCAGATGGCGATGCTGGCCG
GCGTGCGCTCGGCCTTCGAGTCCCTGCTCGTGCAGTTCGATCCGGCGCGCATCGAGCAGGAGTCCGAAGGCGGCGGGCGG
CGGCTCTCGCTGGGCGGCAACCGCCCGCGCCACTGGGAGCGCTACAAGGAGCAGTTCGAGGCGCTCACGCGCAATCCCGA
CGAATGCTTCCGGCGCCTGTTCGGCGACGAATTCGCGCGCGCCTACGAGCAACAACTGGCGCGCCTGAAGCAGCGCCGCC
CCTGA