Detailed information of component protein


Summary

Component ID T6CP016244
Component protein type TssI
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (629 a.a.); Nucleotide sequence (1887 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29660
Coordinate (Strand) 68117..70003 (+)
NCBI ID 836691990
GenBank LEKY01000074
Uniprot ID UPI00064AE1AD
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.8e-85 23..333
Phage_base_V PF04717.14 5.9e-13 393..461
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-628 MAHAITLSSNLGSSLLFSNLSAEEALGRLFTYRLEAISKNASADLRALLGTPMTVKLVSPQGYTRYFNGIVRDAQQSGFVNIDGVRYAVYGFTLVPKPWLSTRRRDCRIYRGMTVPQIVQSVLNDVGYSDVKPSLSGSYPAREYCVQYRESDFDFISRLMEQEGIYYFFTHAEGSHTMVLADALGAHTTVPSFEQIPYAPPTERGKRMKASISDWQTSREVNTTRVQLDDYDYLKPKASLLASEDLTDQADATSVGGLEVYDWSYEYVGYDQKPSDGQRYAQVRADALNVPLLLSQGSTDACGLATGVLFRLKDFPLADANQEYLVTETEIRLVEPDYVTGGGIDDDEEPFRCSFKAIRGRQPFRTAQTTPRPRIAGLQTAVVHGDTAEDIAVDKYGRVQVSFFWSRPGKPHADNSCPVRVAQLWAGKRWGAQFIPRVGQEVVVSFLDGNPDRPLIIGSVYNADNMPPYSLPDNKTQSGVKSRSHQGGGSEDYNEIRFEDRKGAEQVLVHAQKDLREESEHDHDVQVGHNYTLTAGNQIRLVTGLASITMKSSGEIDIQGTNLTINGEMNVGLMSGIAMEINSKANLNMSSIAAMEILSEADCLIQSTNLQLIGTATAVLGGGAPMIL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7470 - -


  Protein sequence: 629 a.a.    

>T6CP016244 LEKY01000074:68117-70003 [Burkholderia gladioli] [TssI]
MAHAITLSSNLGSSLLFSNLSAEEALGRLFTYRLEAISKNASADLRALLGTPMTVKLVSPQGYTRYFNGIVRDAQQSGFV
NIDGVRYAVYGFTLVPKPWLSTRRRDCRIYRGMTVPQIVQSVLNDVGYSDVKPSLSGSYPAREYCVQYRESDFDFISRLM
EQEGIYYFFTHAEGSHTMVLADALGAHTTVPSFEQIPYAPPTERGKRMKASISDWQTSREVNTTRVQLDDYDYLKPKASL
LASEDLTDQADATSVGGLEVYDWSYEYVGYDQKPSDGQRYAQVRADALNVPLLLSQGSTDACGLATGVLFRLKDFPLADA
NQEYLVTETEIRLVEPDYVTGGGIDDDEEPFRCSFKAIRGRQPFRTAQTTPRPRIAGLQTAVVHGDTAEDIAVDKYGRVQ
VSFFWSRPGKPHADNSCPVRVAQLWAGKRWGAQFIPRVGQEVVVSFLDGNPDRPLIIGSVYNADNMPPYSLPDNKTQSGV
KSRSHQGGGSEDYNEIRFEDRKGAEQVLVHAQKDLREESEHDHDVQVGHNYTLTAGNQIRLVTGLASITMKSSGEIDIQG
TNLTINGEMNVGLMSGIAMEINSKANLNMSSIAAMEILSEADCLIQSTNLQLIGTATAVLGGGAPMIL*

  Nucleotide sequence: 1887 bp    

>T6CP016244 LEKY01000074:68117-70003 [Burkholderia gladioli] [TssI]
ATGGCTCACGCAATCACGCTCAGCTCCAATCTCGGCAGCAGCCTGCTGTTCTCGAACCTCAGCGCCGAGGAAGCACTCGG
CCGCCTGTTCACCTACCGGCTCGAGGCGATCAGCAAGAACGCCTCGGCCGACCTGCGCGCGCTGCTCGGCACGCCGATGA
CGGTCAAGCTGGTGAGCCCGCAGGGCTACACGCGCTATTTCAACGGCATCGTGCGCGATGCGCAGCAGAGCGGCTTCGTC
AATATCGACGGCGTGCGCTACGCGGTCTATGGCTTCACCCTGGTGCCCAAGCCCTGGCTCTCGACGCGCCGCCGCGACTG
CCGCATCTATCGCGGCATGACGGTGCCGCAGATCGTGCAGTCGGTGCTCAACGACGTGGGCTACAGCGACGTCAAGCCGA
GCCTGAGCGGCAGCTACCCGGCGCGCGAATACTGCGTGCAGTACCGCGAGAGCGATTTCGACTTCATCAGCCGGCTGATG
GAGCAGGAAGGCATCTACTACTTCTTCACGCATGCCGAGGGCAGCCACACCATGGTGCTGGCCGACGCGCTCGGCGCGCA
TACCACGGTGCCGAGCTTCGAGCAGATCCCCTATGCGCCGCCCACCGAGCGCGGCAAGCGCATGAAGGCCTCGATCAGCG
ACTGGCAAACCTCGCGCGAGGTCAACACCACGCGCGTGCAGCTCGACGACTACGACTACCTGAAGCCGAAGGCCTCGCTG
CTGGCCTCGGAGGACTTGACCGACCAGGCCGACGCGACCAGCGTCGGCGGCCTGGAGGTGTACGACTGGTCCTACGAATA
CGTCGGCTACGACCAGAAGCCGTCGGACGGCCAGCGTTACGCGCAGGTGCGCGCCGATGCGCTGAACGTGCCGCTGCTGC
TCAGCCAGGGCAGCACCGATGCCTGCGGCCTGGCCACTGGCGTGCTGTTCCGCCTCAAGGATTTCCCGCTGGCCGACGCG
AACCAGGAATACCTCGTCACCGAGACCGAGATCCGGCTGGTCGAGCCCGACTACGTGACCGGCGGCGGCATCGACGACGA
CGAGGAGCCGTTTCGCTGCAGCTTCAAGGCGATCCGCGGCCGCCAGCCGTTCCGCACCGCGCAGACCACCCCGCGGCCGC
GCATCGCCGGGCTGCAGACGGCGGTGGTGCATGGCGACACGGCCGAGGACATCGCGGTCGACAAATACGGCCGCGTGCAG
GTGAGCTTTTTCTGGAGCCGCCCCGGCAAGCCGCATGCCGACAATTCCTGCCCGGTTCGGGTGGCCCAGCTGTGGGCCGG
CAAGCGCTGGGGCGCGCAGTTCATCCCGCGCGTCGGGCAGGAGGTGGTGGTCAGCTTCCTGGACGGCAATCCGGATCGGC
CGCTGATCATCGGCAGCGTCTACAACGCCGACAACATGCCGCCCTACAGCCTGCCCGACAACAAGACCCAGAGCGGCGTG
AAGAGCCGCAGCCACCAGGGCGGCGGCAGCGAGGACTACAACGAGATCCGCTTCGAGGACCGCAAGGGCGCCGAGCAGGT
GCTGGTGCACGCGCAGAAGGACCTGCGCGAGGAATCCGAGCACGACCACGACGTGCAGGTCGGCCACAACTACACGCTGA
CGGCCGGCAACCAGATCCGCCTGGTCACCGGGCTGGCCAGCATCACCATGAAGAGCTCGGGCGAGATCGATATCCAGGGC
ACCAACCTGACCATCAACGGCGAGATGAACGTGGGCCTGATGTCGGGCATCGCGATGGAGATCAACTCCAAGGCGAACCT
GAACATGAGCTCGATCGCGGCGATGGAGATCCTCTCCGAGGCCGATTGCCTGATCCAGTCGACCAACCTGCAGTTGATCG
GCACGGCCACGGCCGTCCTGGGCGGCGGCGCGCCGATGATCCTGTGA