Detailed information of component protein


Summary

Component ID T6CP016243
Component protein type TssH
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (953 a.a.); Nucleotide sequence (2859 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29640
Coordinate (Strand) 62231..65089 (+)
NCBI ID 836691986
GenBank LEKY01000074
Uniprot ID UPI00064AAE38
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
AAA_2PF07724.166.5e-38665..831
AAA_lid_9PF17871.31.2e-27383..475
ClpB_D2-smallPF10431.112.1e-11838..918
AAAPF00004.311e-08243..356
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-952MAEISRGALFGKLNAIAYRGIESATVFCKLRGNPNVELVHWIHQILQAQDSDLHRIVRHFGLNPSNLARDVTAALERLPRGSTTISDLSAEVEEAVERGWVFATLMFGEAQVRTGYLLVGMLRTRHLRHALQAVSAEFGKLRPETLADEFAAIVAGSPEDSLGATDGFRADAVGAAGAAGAAPGEASGALAPAQMGRQQALQQFTVDLTAQAREGRIDPIVGRDGEIRQVVDILMRRRQNNPMLVGEAGVGKTAVVEGFALRIARGDVPPALKEVQVRTLDIGLLQAGASMKGEFENRLRQVIDEVQASPRPVILFIDEAHTLVGAGGAAGTGDAANLLKPALARGNLRTIGATTWAEYRKHIEKDPALTRRFQTVPVDEPDEAKAVLMMRGVASVMERHHRVQVLDEALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAISQHAVPAEIDDTLKRIEALETEQAIIARERQIGIEVEARETQAATALEAQRARLATLEAAWAGEKALVERILSLRAQLRGELQPVDGTGSLGAPEAGAVDVEAAPPTQAPALEAAVDGAAPAVLDEAARAAVLAELRALQAELAELQGESPLILPSVDYQAVASVVADWTGIPVGRMLRSELQTVMNLANLMCERVIGQDHAMEAIAKRIQTSRAGLDNPDRPIGVFMLAGTSGVGKTETALALAEALYGGEHNLITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHELFFQVFDKGVMEDGEGRAINFRNTLILLTTNIGTDLIAGLCRDPELMPDAEGLAKALREPLLKAFPPALLGRLVAIPYFPLSAEMLGRIVRLQLERIRRRVEARYRVPFDYDDAVVQLVVGRCTESESGGRMIDAILTNTMLPAVSREFLTRMIDGGEVARVSVGVEHGDFAYRFDMQAPAPGPVATQALALPQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9930--


  Protein sequence: 953 a.a.    

>T6CP016243 LEKY01000074:62231-65089 [Burkholderia gladioli] [TssH]
MAEISRGALFGKLNAIAYRGIESATVFCKLRGNPNVELVHWIHQILQAQDSDLHRIVRHFGLNPSNLARDVTAALERLPR
GSTTISDLSAEVEEAVERGWVFATLMFGEAQVRTGYLLVGMLRTRHLRHALQAVSAEFGKLRPETLADEFAAIVAGSPED
SLGATDGFRADAVGAAGAAGAAPGEASGALAPAQMGRQQALQQFTVDLTAQAREGRIDPIVGRDGEIRQVVDILMRRRQN
NPMLVGEAGVGKTAVVEGFALRIARGDVPPALKEVQVRTLDIGLLQAGASMKGEFENRLRQVIDEVQASPRPVILFIDEA
HTLVGAGGAAGTGDAANLLKPALARGNLRTIGATTWAEYRKHIEKDPALTRRFQTVPVDEPDEAKAVLMMRGVASVMERH
HRVQVLDEALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAISQHAVPAEIDDTLKRIEALETEQAIIARERQIGIEVE
ARETQAATALEAQRARLATLEAAWAGEKALVERILSLRAQLRGELQPVDGTGSLGAPEAGAVDVEAAPPTQAPALEAAVD
GAAPAVLDEAARAAVLAELRALQAELAELQGESPLILPSVDYQAVASVVADWTGIPVGRMLRSELQTVMNLANLMCERVI
GQDHAMEAIAKRIQTSRAGLDNPDRPIGVFMLAGTSGVGKTETALALAEALYGGEHNLITINMSEFQEAHTVSTLKGAPP
GYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHELFFQVFDKGVMEDGEGRAINFRNTLILLTTNIGTDLIAGLCRD
PELMPDAEGLAKALREPLLKAFPPALLGRLVAIPYFPLSAEMLGRIVRLQLERIRRRVEARYRVPFDYDDAVVQLVVGRC
TESESGGRMIDAILTNTMLPAVSREFLTRMIDGGEVARVSVGVEHGDFAYRFDMQAPAPGPVATQALALPQA*

  Nucleotide sequence: 2859 bp    

>T6CP016243 LEKY01000074:62231-65089 [Burkholderia gladioli] [TssH]
ATGGCCGAGATCAGTCGCGGCGCCTTGTTCGGCAAGCTCAACGCGATCGCCTACCGGGGCATCGAAAGCGCCACCGTGTT
CTGCAAGCTGCGCGGCAACCCCAACGTGGAGCTGGTGCACTGGATCCACCAGATCCTGCAGGCGCAGGATTCCGACCTGC
ATCGCATCGTGCGCCACTTCGGGCTCAACCCCTCGAACCTGGCGCGCGACGTGACGGCCGCGCTGGAGCGCCTGCCGCGC
GGCAGCACCACCATCTCCGACCTGTCCGCCGAGGTGGAGGAGGCGGTCGAGCGCGGCTGGGTGTTCGCCACCCTGATGTT
CGGCGAGGCCCAGGTGCGCACCGGCTACCTGCTGGTCGGCATGCTGCGCACGCGCCATCTGCGCCACGCGCTGCAGGCGG
TCTCGGCCGAGTTCGGCAAGCTCAGGCCGGAGACGCTGGCCGACGAGTTCGCCGCGATCGTGGCCGGCTCGCCCGAGGAC
AGCCTGGGCGCCACCGACGGCTTCCGCGCCGACGCAGTGGGCGCAGCGGGCGCGGCGGGGGCCGCCCCGGGCGAGGCCAG
CGGCGCGCTGGCGCCGGCCCAGATGGGTCGCCAGCAGGCCTTGCAGCAGTTCACCGTGGATCTCACCGCGCAGGCGCGCG
AGGGCCGCATCGACCCGATCGTCGGCCGCGACGGCGAGATCCGCCAGGTGGTCGACATCCTGATGCGGCGCCGCCAGAAC
AACCCGATGCTGGTGGGCGAGGCGGGCGTGGGCAAGACCGCCGTGGTGGAGGGCTTCGCGCTGCGCATCGCGCGCGGCGA
CGTGCCGCCCGCGCTCAAGGAGGTGCAGGTGCGCACGCTCGACATCGGCCTGCTGCAGGCCGGCGCGAGCATGAAGGGCG
AGTTCGAGAACCGCCTGCGCCAGGTGATCGACGAGGTGCAGGCCTCGCCGCGCCCGGTGATCCTGTTCATCGACGAGGCG
CACACGCTGGTGGGCGCGGGCGGCGCGGCCGGCACCGGCGACGCGGCCAACCTGCTCAAGCCGGCCCTGGCGCGCGGCAA
CCTGCGCACCATCGGCGCCACCACCTGGGCCGAGTACCGCAAGCACATCGAGAAGGACCCGGCGCTCACGCGGCGCTTCC
AGACCGTGCCGGTGGACGAGCCCGACGAGGCCAAGGCGGTCCTGATGATGCGCGGCGTGGCCAGCGTGATGGAGCGCCAC
CACCGCGTGCAGGTGCTCGACGAGGCGCTGGAGGCCGCCGTCAAGCTCTCGCATCGCTACATCCCGGCACGCCAGTTGCC
CGACAAGTCGGTCAGCCTGCTCGACACCGCCTGTGCGCGCGTGGCGATCAGCCAGCACGCGGTGCCGGCCGAGATCGACG
ACACCCTCAAGCGCATCGAGGCGCTCGAGACCGAGCAGGCCATCATCGCGCGCGAGCGGCAGATCGGCATCGAGGTCGAA
GCCCGCGAGACACAGGCGGCCACCGCGCTGGAGGCGCAACGCGCGCGGCTGGCCACGCTGGAGGCCGCCTGGGCCGGCGA
GAAGGCGCTGGTGGAGCGGATCCTTTCGTTGCGCGCGCAACTGCGCGGCGAGCTGCAGCCGGTGGACGGCACCGGCAGCC
TCGGCGCGCCCGAGGCCGGCGCCGTCGATGTCGAGGCCGCGCCGCCGACGCAGGCGCCAGCGCTCGAGGCCGCGGTCGAC
GGCGCGGCGCCCGCCGTGCTCGACGAAGCCGCGCGCGCGGCCGTGCTGGCCGAGCTGCGCGCCTTGCAGGCCGAGCTGGC
CGAGCTGCAGGGCGAGAGCCCGCTGATCCTGCCGAGCGTCGACTACCAGGCGGTCGCCTCGGTGGTGGCCGACTGGACCG
GCATCCCGGTGGGCCGCATGCTGCGCAGCGAACTGCAGACCGTGATGAACCTCGCGAACCTGATGTGCGAGCGCGTGATC
GGCCAGGACCACGCGATGGAGGCGATCGCCAAGCGGATCCAGACCTCGCGCGCCGGGCTCGACAATCCCGACCGACCGAT
CGGCGTGTTCATGCTGGCCGGCACCTCGGGCGTGGGCAAGACCGAGACCGCGCTGGCGCTGGCCGAGGCCTTGTACGGCG
GCGAGCACAACCTGATCACCATCAACATGAGCGAGTTCCAGGAGGCGCATACCGTCTCCACGCTCAAGGGCGCGCCGCCG
GGCTACGTCGGTTACGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGCCGCAAGCCGTATTCGGTGGTGCTGCTCGACGA
GGTCGAGAAGGCGCATCCGGACGTGCACGAGCTGTTCTTCCAGGTGTTCGACAAGGGCGTGATGGAGGACGGCGAGGGCC
GCGCGATCAACTTCCGCAACACGCTGATCCTGCTGACCACCAATATCGGCACCGATCTGATCGCCGGCCTGTGCCGCGAT
CCGGAGCTGATGCCCGATGCCGAGGGCCTCGCCAAGGCGCTGCGCGAGCCGCTCCTGAAGGCCTTCCCGCCCGCGCTGCT
GGGCCGCCTGGTGGCGATCCCGTATTTCCCGCTCAGCGCCGAGATGCTGGGGCGCATCGTGAGGCTGCAGCTGGAGCGCA
TCCGCCGCCGGGTCGAGGCGCGCTACCGCGTGCCCTTCGACTACGACGATGCCGTGGTGCAACTGGTGGTGGGCCGCTGC
ACCGAGAGCGAATCGGGCGGCCGCATGATCGACGCGATCCTGACCAACACCATGCTGCCCGCCGTCAGCCGCGAGTTCCT
CACGCGCATGATCGACGGCGGCGAGGTGGCGCGCGTGAGCGTGGGCGTCGAGCACGGCGATTTCGCCTATCGCTTCGACA
TGCAGGCGCCGGCGCCGGGCCCGGTCGCCACGCAGGCGCTGGCCTTGCCCCAGGCTTGA