Detailed information of component protein


Summary

Component ID T6CP016242
Component protein type TssG
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29635
Coordinate (Strand) 61120..62136 (+)
NCBI ID 503454541
GenBank LEKY01000074
Uniprot ID A0A2A7SD47_BURGA, F2LJK3_BURGS
KEGG ID bgd:bgla_2g03940
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 9.9e-102 22..321
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MARNARQAPDPVALEAALRERPFDFEFFEAMRRLECAYPARPRLGHSTKPAEDPVRLAHAATLEFPARSIERFEPGTGGAPGRLHGLFLGLFGPQGPLPLHLTEHAVDRERNAKDPTLTAFADVFHHRMLSLFYRAWADAQPTVQYDRPESDRFRTYVGALIGIATPRLQDRDALPDQFKRFFAGRLVPQARNAEGLRGLLEHYFGVPVQVLEFVVGWMTLPEDAHLRMGGAMASMGRNATLGAQVRGAQQRFRLRIGPLGLAEFNRFLPGGEALRELTAAVKLYAGEEKGWDVQLVLKKEEVPASHLGQAGRMGFNTWMGRYAKPADADQVVLTPVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9770 - -


  Protein sequence: 339 a.a.    

>T6CP016242 LEKY01000074:61120-62136 [Burkholderia gladioli] [TssG]
MARNARQAPDPVALEAALRERPFDFEFFEAMRRLECAYPARPRLGHSTKPAEDPVRLAHAATLEFPARSIERFEPGTGGA
PGRLHGLFLGLFGPQGPLPLHLTEHAVDRERNAKDPTLTAFADVFHHRMLSLFYRAWADAQPTVQYDRPESDRFRTYVGA
LIGIATPRLQDRDALPDQFKRFFAGRLVPQARNAEGLRGLLEHYFGVPVQVLEFVVGWMTLPEDAHLRMGGAMASMGRNA
TLGAQVRGAQQRFRLRIGPLGLAEFNRFLPGGEALRELTAAVKLYAGEEKGWDVQLVLKKEEVPASHLGQAGRMGFNTWM
GRYAKPADADQVVLTPVA*

  Nucleotide sequence: 1017 bp    

>T6CP016242 LEKY01000074:61120-62136 [Burkholderia gladioli] [TssG]
ATGGCCCGCAACGCCCGGCAAGCGCCCGATCCTGTAGCACTGGAGGCGGCGCTGCGCGAGCGGCCGTTCGACTTCGAATT
CTTCGAGGCGATGCGGCGGCTCGAATGCGCCTACCCGGCCCGCCCGCGCCTGGGCCACTCGACCAAGCCGGCCGAGGATC
CGGTGCGGCTCGCGCACGCGGCCACGCTGGAATTCCCGGCGCGCAGCATCGAGCGCTTCGAGCCCGGCACGGGCGGCGCC
CCGGGGCGGCTCCACGGGCTGTTCCTGGGCCTGTTCGGGCCGCAGGGGCCGCTGCCGCTGCACCTCACCGAACACGCGGT
GGACCGCGAGCGCAATGCCAAGGACCCCACGCTGACGGCCTTCGCCGACGTGTTCCATCACCGCATGCTGAGCCTGTTCT
ACCGCGCCTGGGCCGATGCGCAGCCCACCGTGCAGTACGACCGGCCCGAGAGCGACCGCTTTCGCACCTATGTCGGCGCG
CTGATCGGCATCGCCACGCCGCGCTTGCAGGACCGCGACGCGCTGCCGGACCAGTTCAAGCGCTTCTTCGCCGGGCGGCT
GGTGCCGCAGGCGCGCAATGCCGAGGGCCTGCGCGGCCTGCTGGAGCACTACTTCGGCGTGCCGGTGCAGGTGCTCGAAT
TCGTGGTCGGCTGGATGACCCTGCCCGAGGACGCGCATCTGCGCATGGGCGGCGCGATGGCCTCGATGGGCCGCAACGCC
ACGCTGGGCGCCCAGGTGCGCGGCGCGCAGCAGCGCTTCCGGCTGCGCATCGGCCCGCTCGGGCTGGCCGAGTTCAACCG
CTTCCTGCCCGGCGGCGAGGCGCTGCGCGAGCTGACGGCCGCCGTCAAGCTCTACGCGGGCGAGGAAAAGGGCTGGGACG
TGCAGCTCGTGCTGAAGAAGGAGGAGGTGCCCGCCAGCCACCTCGGGCAGGCGGGCCGGATGGGTTTCAACACCTGGATG
GGGCGCTACGCCAAGCCGGCCGATGCCGACCAGGTGGTGCTGACGCCGGTGGCCTAG