Detailed information of component protein


Summary

Component ID T6CP016239
Component protein type TagJ
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (274 a.a.); Nucleotide sequence (822 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29620
Coordinate (Strand) 57922..58743 (+)
NCBI ID 836691984
GenBank LEKY01000074
Uniprot ID UPI000649958F
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
ImpEPF07024.151.2e-38148..269
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-273VNPSLADTSPADAAALLAHGRLDEALSALSAEVRGRPADASLRVFLFQLLALVGEWDRAANQLKMAAELDERNTLMSTAYEFALRGEHERAAVLAGGKCPGIAGEPATWHAPLIRALHALTEKRIDETLAQRALAFDTAETVAGSIDGEPFEWIADADPRFGPCLELILKSGYVWAPFSQLRSLEFEAPSDLRDKVWAPVKLSWTSGAESVGFVPCRYAGSERSGIADLALAAGTSWVEHGEDCFTGRGQRMLVTDRAEYPLLDVRSITFGAR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9848--


  Protein sequence: 274 a.a.    

>T6CP016239 LEKY01000074:57922-58743 [Burkholderia gladioli] [TagJ]
VNPSLADTSPADAAALLAHGRLDEALSALSAEVRGRPADASLRVFLFQLLALVGEWDRAANQLKMAAELDERNTLMSTAY
EFALRGEHERAAVLAGGKCPGIAGEPATWHAPLIRALHALTEKRIDETLAQRALAFDTAETVAGSIDGEPFEWIADADPR
FGPCLELILKSGYVWAPFSQLRSLEFEAPSDLRDKVWAPVKLSWTSGAESVGFVPCRYAGSERSGIADLALAAGTSWVEH
GEDCFTGRGQRMLVTDRAEYPLLDVRSITFGAR*

  Nucleotide sequence: 822 bp    

>T6CP016239 LEKY01000074:57922-58743 [Burkholderia gladioli] [TagJ]
GTGAACCCAAGCCTTGCCGACACCAGCCCGGCCGACGCCGCGGCGCTGCTTGCCCATGGACGCCTGGACGAGGCCCTGAG
CGCCCTGTCCGCCGAGGTCCGCGGCCGACCCGCCGATGCCTCGCTGCGCGTGTTCCTGTTCCAGTTGCTCGCGCTGGTGG
GCGAATGGGATCGCGCGGCCAACCAGTTGAAGATGGCGGCCGAACTCGACGAGCGGAACACGCTGATGTCGACCGCCTAT
GAATTCGCGCTGCGCGGCGAGCACGAGCGCGCGGCCGTGCTGGCCGGCGGCAAGTGCCCCGGCATCGCCGGCGAGCCGGC
CACCTGGCACGCGCCGCTGATCCGCGCGCTGCACGCGCTGACCGAGAAGCGCATCGACGAGACGCTGGCGCAGCGCGCGC
TCGCCTTCGACACGGCCGAGACCGTGGCCGGCAGCATCGACGGCGAGCCCTTCGAGTGGATCGCCGACGCCGATCCGCGC
TTCGGCCCCTGCCTGGAGCTGATCCTGAAGAGCGGCTACGTGTGGGCGCCGTTCTCGCAGTTGCGCTCGCTCGAGTTCGA
GGCACCCAGCGACCTGCGCGACAAGGTCTGGGCACCGGTCAAGCTGAGCTGGACGAGCGGCGCCGAATCGGTGGGCTTCG
TGCCCTGCCGCTACGCCGGCAGCGAGCGCTCCGGCATCGCCGACCTGGCGCTGGCCGCCGGCACCTCCTGGGTCGAGCAC
GGCGAGGACTGCTTCACCGGCCGCGGCCAGCGCATGCTGGTGACCGATCGCGCCGAGTACCCGCTGCTCGACGTGCGCTC
GATCACCTTCGGCGCGCGCTGA