Detailed information of component protein
Summary
Component ID | T6CP016238 |
Component protein type | TssD |
T6SS ID (Type) | T6SS01301 (Type i3) |
Strain | Burkholderia gladioli strain NGJ1 |
Replicon | chromosome |
Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
Reference |
External database links
Locus tag (Gene) | ACI79_RS29615 |
Coordinate (Strand) | 57344..57847 (+) |
NCBI ID | 738096046 |
GenBank | LEKY01000074 |
Uniprot ID | A0A095FFB5_BURGA |
KEGG ID | bgo:BM43_7145 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_HCP | PF05638.14 | 2.4e-27 | 12..140 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-167 | MAFDMHLKFGSGSVTIQGASNHSKHKNEVPIIAWSWGVSNTGNLHTGAGYASGGKANIQDITVTKYIDSCSNAILNACCTGARVDNAYLYVTNATGQQTDFVTIELSEGVLITSVSTGGTGGDERLTENITLHFGKFKYSFQPQDDEGKANGGTKDFTYDIQQVAKQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.8585 | - | - |
Protein sequence: 168 a.a.
>T6CP016238 LEKY01000074:57344-57847 [Burkholderia gladioli] [TssD]
MAFDMHLKFGSGSVTIQGASNHSKHKNEVPIIAWSWGVSNTGNLHTGAGYASGGKANIQDITVTKYIDSCSNAILNACCT
GARVDNAYLYVTNATGQQTDFVTIELSEGVLITSVSTGGTGGDERLTENITLHFGKFKYSFQPQDDEGKANGGTKDFTYD
IQQVAKQ*
MAFDMHLKFGSGSVTIQGASNHSKHKNEVPIIAWSWGVSNTGNLHTGAGYASGGKANIQDITVTKYIDSCSNAILNACCT
GARVDNAYLYVTNATGQQTDFVTIELSEGVLITSVSTGGTGGDERLTENITLHFGKFKYSFQPQDDEGKANGGTKDFTYD
IQQVAKQ*
Nucleotide sequence: 504 bp
>T6CP016238 LEKY01000074:57344-57847 [Burkholderia gladioli] [TssD]
ATGGCATTCGACATGCACCTGAAATTCGGCTCCGGTTCGGTCACGATCCAGGGCGCGTCCAACCATTCGAAGCACAAGAA
CGAGGTGCCGATCATCGCGTGGTCGTGGGGCGTGAGCAACACCGGCAACCTGCACACCGGCGCCGGCTACGCCTCGGGCG
GCAAGGCCAACATCCAGGACATCACGGTCACCAAGTACATCGACAGCTGCTCGAACGCGATCCTGAACGCCTGCTGTACC
GGCGCGCGCGTCGACAACGCCTACCTGTACGTGACCAACGCCACCGGCCAGCAGACCGACTTCGTGACCATCGAGCTCAG
CGAAGGCGTGCTGATCACCTCGGTGTCGACCGGCGGCACCGGCGGCGACGAGCGCCTGACCGAGAACATCACGCTGCACT
TCGGCAAGTTCAAGTACTCGTTCCAGCCGCAGGACGACGAGGGCAAGGCCAACGGCGGCACCAAGGACTTCACCTACGAC
ATCCAGCAGGTCGCCAAGCAGTAA
ATGGCATTCGACATGCACCTGAAATTCGGCTCCGGTTCGGTCACGATCCAGGGCGCGTCCAACCATTCGAAGCACAAGAA
CGAGGTGCCGATCATCGCGTGGTCGTGGGGCGTGAGCAACACCGGCAACCTGCACACCGGCGCCGGCTACGCCTCGGGCG
GCAAGGCCAACATCCAGGACATCACGGTCACCAAGTACATCGACAGCTGCTCGAACGCGATCCTGAACGCCTGCTGTACC
GGCGCGCGCGTCGACAACGCCTACCTGTACGTGACCAACGCCACCGGCCAGCAGACCGACTTCGTGACCATCGAGCTCAG
CGAAGGCGTGCTGATCACCTCGGTGTCGACCGGCGGCACCGGCGGCGACGAGCGCCTGACCGAGAACATCACGCTGCACT
TCGGCAAGTTCAAGTACTCGTTCCAGCCGCAGGACGACGAGGGCAAGGCCAACGGCGGCACCAAGGACTTCACCTACGAC
ATCCAGCAGGTCGCCAAGCAGTAA