Detailed information of component protein


Summary

Component ID T6CP016237
Component protein type TssC
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29610
Coordinate (Strand) 55729..57222 (+)
NCBI ID 836692010
GenBank LEKY01000074
Uniprot ID UPI00064AADB8
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.2e-132 68..369
VipB_2 PF18945.2 3.8e-43 380..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MESQKQFEGAPQGAVAEANDFAALLNKEFKPKNERAKEEVEAAVRTLAEQVLRDSNVVSDDVTQTINAYVAEIDRKLSEQLNHVLHHAEFQKLEGAWRGLHHLVTHSETDPMLKIRVMNISKKELAKNLKRFKGVAWDQSPVFKRVYEEEYGQLGGEPYGCLIGDYYFDHSPQDVELLRGISQIAAASHAPFISAADSSLLGMENWNELANPRDLSMIFTTPDYAGWRSLREMDDARYLALTMPRTLARLPYGAKTDPVEEFDFEEDTEGADSGKYTWQNAAYSMAVNINRSFKLYGWCTRIRGVESGGAVENLPVHTFPSDDGGVDMKCPTEIAITDRRSAELDKMGLMPLVHRKNSDVAAFIGAQSVAKPEEYDDPAATANSNLSARLPYMFACCRFAHYLKCIVRDKIGSFSTREQMENWLSNWVMNYVDGDPVNSSEETKARKPLAAAQVVVEEVEDNPGYYTSKFFLKPHYQLEGLTVSLRLVSRLPSARAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9852 - -


  Protein sequence: 498 a.a.    

>T6CP016237 LEKY01000074:55729-57222 [Burkholderia gladioli] [TssC]
MESQKQFEGAPQGAVAEANDFAALLNKEFKPKNERAKEEVEAAVRTLAEQVLRDSNVVSDDVTQTINAYVAEIDRKLSEQ
LNHVLHHAEFQKLEGAWRGLHHLVTHSETDPMLKIRVMNISKKELAKNLKRFKGVAWDQSPVFKRVYEEEYGQLGGEPYG
CLIGDYYFDHSPQDVELLRGISQIAAASHAPFISAADSSLLGMENWNELANPRDLSMIFTTPDYAGWRSLREMDDARYLA
LTMPRTLARLPYGAKTDPVEEFDFEEDTEGADSGKYTWQNAAYSMAVNINRSFKLYGWCTRIRGVESGGAVENLPVHTFP
SDDGGVDMKCPTEIAITDRRSAELDKMGLMPLVHRKNSDVAAFIGAQSVAKPEEYDDPAATANSNLSARLPYMFACCRFA
HYLKCIVRDKIGSFSTREQMENWLSNWVMNYVDGDPVNSSEETKARKPLAAAQVVVEEVEDNPGYYTSKFFLKPHYQLEG
LTVSLRLVSRLPSARAA*

  Nucleotide sequence: 1494 bp    

>T6CP016237 LEKY01000074:55729-57222 [Burkholderia gladioli] [TssC]
ATGGAAAGCCAGAAGCAATTCGAAGGCGCGCCGCAGGGCGCGGTGGCCGAGGCGAACGATTTCGCGGCGCTGCTGAACAA
GGAGTTCAAGCCCAAGAACGAGCGCGCCAAGGAGGAAGTGGAAGCCGCGGTGCGCACGCTCGCCGAGCAGGTGCTGCGCG
ATTCGAACGTGGTCTCGGACGACGTCACGCAGACCATCAACGCCTACGTGGCCGAGATTGACCGCAAGCTCAGCGAGCAG
CTGAACCACGTGCTGCACCACGCCGAATTCCAGAAGCTGGAAGGCGCCTGGCGCGGCCTGCATCACCTGGTCACCCATTC
CGAAACGGATCCGATGCTGAAGATCCGCGTGATGAACATCTCGAAGAAGGAACTGGCCAAGAACCTCAAGCGCTTCAAGG
GCGTGGCCTGGGACCAGAGCCCGGTGTTCAAGCGCGTCTACGAGGAAGAATACGGCCAGCTCGGCGGCGAGCCCTACGGC
TGCCTGATCGGCGATTACTACTTCGACCACAGTCCTCAGGACGTCGAACTGCTGCGCGGCATCTCGCAGATCGCCGCGGC
CTCGCACGCGCCCTTCATCTCGGCGGCCGATTCCAGCCTGCTCGGCATGGAGAACTGGAACGAGCTGGCGAACCCGCGCG
ACCTGTCGATGATCTTCACCACGCCCGACTACGCCGGCTGGCGCTCGCTGCGCGAGATGGACGACGCGCGCTACCTGGCG
CTGACCATGCCGCGCACGCTGGCGCGCCTGCCCTACGGCGCGAAGACCGACCCGGTGGAGGAATTCGATTTCGAGGAAGA
CACCGAAGGCGCGGACTCTGGCAAGTACACCTGGCAGAACGCGGCCTATTCGATGGCGGTCAACATCAACCGCTCGTTCA
AGCTCTATGGCTGGTGCACGCGGATTCGCGGCGTGGAATCGGGCGGCGCGGTGGAGAACCTGCCGGTGCATACCTTCCCG
AGCGACGACGGCGGGGTGGACATGAAGTGCCCGACCGAGATCGCGATCACCGACCGCCGCTCGGCCGAGCTCGACAAGAT
GGGCCTGATGCCGCTGGTGCATCGCAAGAATTCCGACGTGGCCGCCTTCATCGGCGCGCAGTCGGTGGCCAAGCCCGAGG
AGTACGACGATCCGGCCGCCACCGCCAACTCGAACCTGTCGGCGCGCCTGCCCTACATGTTCGCCTGCTGCCGCTTCGCG
CACTACCTGAAGTGCATCGTGCGCGACAAGATCGGCTCGTTCAGCACGCGCGAGCAGATGGAGAACTGGCTGTCGAACTG
GGTGATGAACTACGTCGACGGCGACCCGGTGAACTCCAGCGAGGAAACCAAGGCGCGCAAGCCGCTGGCGGCCGCGCAGG
TGGTGGTGGAGGAAGTCGAGGACAACCCCGGCTACTACACCTCCAAGTTCTTCCTCAAGCCGCATTACCAGCTCGAAGGC
CTGACGGTGTCGCTGCGCCTGGTCTCGCGCCTGCCCTCGGCACGCGCCGCATGA