Detailed information of component protein


Summary

Component ID T6CP016236
Component protein type TssB
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (174 a.a.); Nucleotide sequence (522 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29605
Coordinate (Strand) 55199..55720 (+)
NCBI ID WP_013689196.1
GenBank LEKY01000074
Uniprot ID A0A560VM92_9BURK, A0A095W979_BURGA, F2LJJ7_BURGS
KEGG ID bgd:bgla_2g03880, bgo:BM43_7143
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_VipAPF05591.141.5e-5612..162
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-173MATRQSSQKFIARNRAPRVQIEYDVELYGAQKKVQIPFVMGVMSDLSGANAGELPPIEERKALEIDVDNFDSRMQSMKPRVNFTVPNTLTGEGNLEVDISFESMDDFSPAAVARKVDSLARLLEARTQLANLGTYLDGKVGAEKLIAQALKDPALLQSLSSAPKAADTEPGQE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9856--


  Protein sequence: 174 a.a.    

>T6CP016236 LEKY01000074:55199-55720 [Burkholderia gladioli] [TssB]
MATRQSSQKFIARNRAPRVQIEYDVELYGAQKKVQIPFVMGVMSDLSGANAGELPPIEERKALEIDVDNFDSRMQSMKPR
VNFTVPNTLTGEGNLEVDISFESMDDFSPAAVARKVDSLARLLEARTQLANLGTYLDGKVGAEKLIAQALKDPALLQSLS
SAPKAADTEPGQE*

  Nucleotide sequence: 522 bp    

>T6CP016236 LEKY01000074:55199-55720 [Burkholderia gladioli] [TssB]
ATGGCAACGAGGCAGAGCAGTCAGAAATTCATTGCGCGCAATCGGGCGCCGCGCGTCCAGATCGAGTACGACGTCGAGTT
GTACGGCGCGCAGAAGAAAGTGCAGATCCCGTTCGTGATGGGCGTGATGTCGGACCTGTCCGGCGCCAATGCCGGCGAGC
TGCCGCCGATCGAGGAGCGCAAGGCGCTCGAGATCGACGTCGACAACTTCGACAGCCGCATGCAGTCGATGAAGCCGCGC
GTCAACTTCACGGTGCCGAACACGCTGACCGGCGAAGGCAACCTCGAGGTCGACATCAGCTTCGAGAGCATGGACGACTT
CTCGCCGGCCGCGGTGGCGCGCAAGGTGGATTCGCTCGCCAGGCTGCTCGAGGCGCGCACCCAGCTGGCCAATCTCGGCA
CCTATCTCGACGGCAAGGTCGGCGCGGAGAAGCTGATCGCGCAGGCGCTGAAGGACCCGGCGCTGCTGCAGTCGCTGAGC
TCGGCGCCCAAGGCCGCCGACACCGAACCCGGACAGGAGTGA