Detailed information of component protein


Summary

Component ID T6CP016234
Component protein type TagF
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (329 a.a.); Nucleotide sequence (987 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13975
Coordinate (Strand) 106504..107490 (-)
NCBI ID 503461811
GenBank LEKY01000012
Uniprot ID A0A095W952_BURGA, F2LI35_BURGS
KEGG ID bgd:bgla_1g04190
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 6.4e-29 10..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-328 MTQTVQAQIAYFGKIPSRGDFVKSPHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARPMHFAFIGSRSKLAIAGHMVASHDASNRRFPFLAATALEVERPLNFIARSPLAFARLWQRAASLMRPLLGKEEPAGALQALGDATVPIDTGGPGHDGTFNDFVEHQSLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELISPFVSQADFELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPATSKLISYLEQPQLSLRVAIDTFREAFVGGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9933 - -


  Protein sequence: 329 a.a.    

>T6CP016234 LEKY01000012:c107490-106504 [Burkholderia gladioli] [TagF]
MTQTVQAQIAYFGKIPSRGDFVKSPHNPQLLQTLDRWIAQAMELLADDPRWKIVYENARPMHFAFIGSRSKLAIAGHMVA
SHDASNRRFPFLAATALEVERPLNFIARSPLAFARLWQRAASLMRPLLGKEEPAGALQALGDATVPIDTGGPGHDGTFND
FVEHQSLFGLEQMLLASGHPVKLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWMELISPFVSQADF
ELAIFIGSIAERERLIIGFNGASARTLHSVVDPQTYSQHNIDIDDPEWVDAHAQHDPATSKLISYLEQPQLSLRVAIDTF
REAFVGGA*

  Nucleotide sequence: 987 bp    

>T6CP016234 LEKY01000012:c107490-106504 [Burkholderia gladioli] [TagF]
ATGACACAAACGGTCCAGGCGCAGATCGCCTACTTCGGCAAGATCCCGTCGCGCGGCGATTTCGTGAAGAGCCCGCACAA
CCCGCAGCTGCTGCAGACGCTCGACCGCTGGATCGCGCAGGCCATGGAGCTGCTGGCCGACGACCCGCGCTGGAAGATCG
TCTACGAGAACGCGCGGCCGATGCACTTCGCCTTCATCGGCTCGCGCAGCAAGCTCGCGATCGCCGGCCACATGGTGGCC
AGCCACGACGCCTCGAACCGGCGCTTCCCGTTCCTCGCCGCCACCGCGCTGGAAGTCGAGCGCCCGCTGAACTTCATCGC
GCGCAGCCCGCTGGCCTTCGCGCGGCTCTGGCAGCGCGCCGCCTCGCTGATGCGCCCGCTGCTCGGCAAGGAGGAGCCGG
CCGGCGCGCTGCAGGCGCTGGGCGACGCCACCGTGCCGATCGACACCGGCGGCCCCGGCCACGACGGCACCTTCAACGAC
TTCGTCGAGCACCAGTCGCTGTTCGGCCTGGAGCAGATGCTGCTGGCCAGCGGCCACCCGGTGAAGCTGCGCGGCGCGAT
GCTGGCGCTGGGCTCGCTGCTGCGCCCGGTGATGCAGAGCGGCTCCTCGCACATCGAGCGCGGGCTGACCCTGCCGCTGC
CAGTCGACCCGTTCTACCGCAGCCTGGTGGCCGCGTTCTGGATGGAGCTGATCTCGCCCTTCGTCTCGCAGGCCGATTTC
GAGCTGGCGATCTTCATCGGCAGCATCGCCGAGCGCGAGCGGCTGATCATCGGCTTCAACGGCGCCTCGGCGCGCACGCT
GCACAGCGTGGTCGACCCGCAAACCTACTCGCAACACAACATCGACATCGACGATCCGGAATGGGTCGACGCCCATGCGC
AACACGATCCCGCGACCAGCAAGCTCATCAGCTACCTCGAACAACCGCAACTGTCGCTGCGCGTGGCGATCGACACGTTC
CGCGAAGCCTTCGTCGGAGGGGCCTGA