Detailed information of component protein
Summary
| Component ID | T6CP016233 |
| Component protein type | TagL |
| T6SS ID (Type) | T6SS01300  (Type i4b) |
| Strain | Burkholderia gladioli strain NGJ1 |
| Replicon | chromosome |
| Sequence | Protein sequence (346 a.a.); Nucleotide sequence (1038 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 105462..106499 (-) |
| NCBI ID | 836689643 |
| GenBank | LEKY01000012 |
| Uniprot ID | UPI00064A98F9 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | MTTSAYRPRLLP |
| Transmembrane helix | 13-35 | AALSTLSLLALGAALAGSGAAFA |
| Outside | 36-345 | DNAGPATVTRVDTSGVTVRTTLIPPAGGAMQPAAAGALGGTAQGGTVLTGTNVANGAGGGPATGAGTGATVSAPAPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAGNVVDQIEVGDVTTPPNWSANVQKLIGPQLKQISKGQLKIDGTSIDVRGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQGILDQTLANRTIEFETGSATLTPQGRAILDQMADAMSKLANRQVTIIGHTDNSGNRATNISLSQARADAVKGYLVAKGIASQQLITTGVGPDQPIASNDTADGRARNRRIEFRVSQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.9349 | pos: 35-36. AFA-DN. | MTTSAYRPRLLPAALSTLSLLALGAALAGSGAAFA |
Protein sequence: 346 a.a.
Nucleotide sequence: 1038 bp