Detailed information of component protein


Summary

Component ID T6CP016233
Component protein type TagL
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (346 a.a.); Nucleotide sequence (1038 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13970
Coordinate (Strand) 105462..106499 (-)
NCBI ID 836689643
GenBank LEKY01000012
Uniprot ID UPI00064A98F9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 8.5e-24 243..337
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MTTSAYRPRLLP
Transmembrane helix 13-35 AALSTLSLLALGAALAGSGAAFA
Outside 36-345 DNAGPATVTRVDTSGVTVRTTLIPPAGGAMQPAAAGALGGTAQGGTVLTGTNVANGAGGGPATGAGTGATVSAPAPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAGNVVDQIEVGDVTTPPNWSANVQKLIGPQLKQISKGQLKIDGTSIDVRGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQGILDQTLANRTIEFETGSATLTPQGRAILDQMADAMSKLANRQVTIIGHTDNSGNRATNISLSQARADAVKGYLVAKGIASQQLITTGVGPDQPIASNDTADGRARNRRIEFRVSQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.9349 pos: 35-36. AFA-DN. MTTSAYRPRLLPAALSTLSLLALGAALAGSGAAFA


  Protein sequence: 346 a.a.    

>T6CP016233 LEKY01000012:c106499-105462 [Burkholderia gladioli] [TagL]
MTTSAYRPRLLPAALSTLSLLALGAALAGSGAAFADNAGPATVTRVDTSGVTVRTTLIPPAGGAMQPAAAGALGGTAQGG
TVLTGTNVANGAGGGPATGAGTGATVSAPAPANATPGQVVAGGKVPDEATKAAVLQKLRDTYGAGNVVDQIEVGDVTTPP
NWSANVQKLIGPQLKQISKGQLKIDGTSIDVRGEVRNEALRQQVASDMANQLNPTYTIRNALRVSASEQGILDQTLANRT
IEFETGSATLTPQGRAILDQMADAMSKLANRQVTIIGHTDNSGNRATNISLSQARADAVKGYLVAKGIASQQLITTGVGP
DQPIASNDTADGRARNRRIEFRVSQ*

  Nucleotide sequence: 1038 bp    

>T6CP016233 LEKY01000012:c106499-105462 [Burkholderia gladioli] [TagL]
ATGACGACCTCCGCGTACCGCCCGCGCCTGCTGCCGGCCGCGCTTTCCACGCTGTCCCTGCTGGCGCTTGGCGCGGCGCT
CGCCGGCTCCGGCGCCGCCTTCGCCGACAACGCGGGCCCCGCAACCGTCACGCGCGTCGACACCAGCGGCGTGACGGTGC
GCACCACCCTGATCCCGCCGGCCGGCGGCGCCATGCAGCCGGCCGCGGCCGGCGCGCTGGGCGGCACCGCCCAGGGCGGC
ACGGTGCTGACCGGCACCAATGTCGCGAACGGCGCGGGCGGCGGCCCGGCCACCGGCGCCGGCACCGGCGCGACCGTGTC
GGCCCCGGCGCCGGCCAATGCCACGCCGGGCCAGGTGGTGGCCGGCGGCAAGGTGCCCGACGAGGCCACCAAGGCGGCCG
TGCTGCAGAAGCTGCGCGACACTTACGGCGCCGGCAACGTGGTCGACCAGATCGAGGTGGGCGACGTCACCACCCCGCCG
AACTGGAGCGCCAACGTGCAGAAGCTGATCGGCCCGCAACTGAAGCAGATCAGCAAGGGACAGCTGAAGATCGACGGCAC
CTCGATCGACGTGAGGGGCGAGGTCCGCAACGAGGCGCTGCGCCAGCAGGTGGCCAGCGACATGGCCAACCAGCTGAACC
CGACCTACACGATCCGCAACGCGCTGCGCGTGAGCGCCTCCGAGCAGGGCATCCTCGACCAGACGCTGGCCAACCGCACC
ATCGAGTTCGAGACCGGCAGCGCCACGCTGACCCCGCAGGGCCGCGCGATCCTGGACCAGATGGCCGACGCGATGAGCAA
GCTGGCGAACCGGCAGGTCACCATCATCGGCCACACCGACAACTCGGGTAACCGCGCCACCAACATCTCGCTGAGCCAGG
CGCGCGCCGATGCGGTGAAGGGCTACCTGGTGGCCAAGGGCATCGCCTCGCAGCAGTTGATCACCACCGGCGTGGGCCCG
GACCAGCCGATCGCCTCGAACGACACCGCCGACGGGCGGGCGCGCAACCGCCGCATCGAGTTCCGCGTCAGCCAGTAA