Detailed information of component protein


Summary

Component ID T6CP016232
Component protein type TssA
T6SS ID (Type) T6SS01300 experimental (Type i4b)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (385 a.a.); Nucleotide sequence (1155 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS13965
Coordinate (Strand) 104214..105368 (+)
NCBI ID 836689642
GenBank LEKY01000012
Uniprot ID UPI000649D255
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.7e-35 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-384 MPIHVTALLAPLSEASPCGEDLLFSSEFDAIQHARKFDDPSLDQGEWITEIKEADWGFVVEQSVELLATRTKDLRLAVWLTEALAIQDGVGGLTQGYELLAGLVHTWWDQVHPLPEGDDAEYRLGNVGWLSGRTAELLRTVALTDGSGSAYTALDWEVAQHVAQAVRRDPDNAHEISRNKPAVEQIEASKRMTSVAFYATLLAKLTAFRAALDALDDELERRAGNAAPSFRQAREAYESVRMLAERFAKEQGYVAEAQPVTPPPAQPGQGAPLERAEPSFKTPLSPEPIAPMPHVQPVQPVPVQVAAPTVIAGIQNRAQAVEQLRAVAKYFRATEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLSHIRELLGLKPDENN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6079 - -


  Protein sequence: 385 a.a.    

>T6CP016232 LEKY01000012:104214-105368 [Burkholderia gladioli] [TssA]
MPIHVTALLAPLSEASPCGEDLLFSSEFDAIQHARKFDDPSLDQGEWITEIKEADWGFVVEQSVELLATRTKDLRLAVWL
TEALAIQDGVGGLTQGYELLAGLVHTWWDQVHPLPEGDDAEYRLGNVGWLSGRTAELLRTVALTDGSGSAYTALDWEVAQ
HVAQAVRRDPDNAHEISRNKPAVEQIEASKRMTSVAFYATLLAKLTAFRAALDALDDELERRAGNAAPSFRQAREAYESV
RMLAERFAKEQGYVAEAQPVTPPPAQPGQGAPLERAEPSFKTPLSPEPIAPMPHVQPVQPVPVQVAAPTVIAGIQNRAQA
VEQLRAVAKYFRATEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLSHIRELLGLKPDENN*

  Nucleotide sequence: 1155 bp    

>T6CP016232 LEKY01000012:104214-105368 [Burkholderia gladioli] [TssA]
ATGCCGATTCACGTCACCGCGCTTCTCGCGCCCCTCAGCGAGGCCTCGCCCTGCGGCGAGGACCTGCTGTTCTCGTCCGA
ATTCGACGCGATCCAGCACGCGCGCAAATTCGACGATCCCTCGCTCGACCAGGGCGAATGGATCACCGAAATCAAGGAAG
CCGATTGGGGCTTCGTGGTCGAGCAGTCGGTCGAACTGCTCGCCACGCGTACCAAGGACCTGCGTCTGGCGGTCTGGCTC
ACCGAGGCACTGGCGATCCAGGACGGCGTGGGCGGGCTGACCCAGGGCTACGAGCTGCTGGCGGGGCTGGTGCATACCTG
GTGGGACCAGGTGCATCCGCTGCCCGAGGGCGACGACGCCGAATACCGGCTCGGCAATGTCGGCTGGCTGTCCGGGCGCA
CCGCCGAGCTGCTGCGCACCGTCGCGCTGACCGACGGCTCGGGCAGCGCCTACACCGCGCTCGACTGGGAGGTGGCCCAG
CACGTCGCGCAGGCGGTACGGCGCGACCCCGACAATGCCCACGAGATCTCGCGCAACAAGCCGGCGGTCGAGCAGATCGA
GGCCTCCAAGCGGATGACCTCGGTGGCCTTCTACGCCACGCTGCTGGCCAAGCTGACGGCGTTCCGCGCCGCGCTCGACG
CGCTCGACGACGAGCTCGAACGGCGCGCCGGCAATGCCGCGCCGAGCTTCCGCCAGGCGCGCGAGGCCTACGAATCGGTG
CGCATGCTGGCCGAGCGTTTCGCCAAGGAGCAGGGTTACGTGGCCGAGGCGCAGCCGGTGACGCCGCCGCCCGCGCAGCC
CGGCCAGGGCGCCCCGCTCGAACGCGCCGAACCGAGTTTCAAGACCCCGCTTTCCCCGGAGCCGATCGCACCGATGCCCC
ACGTCCAGCCCGTTCAGCCCGTCCCGGTCCAGGTCGCTGCGCCGACCGTGATCGCCGGCATCCAGAATCGCGCGCAGGCC
GTCGAGCAGTTGCGCGCCGTCGCCAAGTATTTCCGCGCCACCGAGCCGCACAGCCCGGTCGCCTATCTCGCCGACAAGGC
CGCCGAATGGGCCGACATGCCGCTGCACCAGTGGCTGGCCTCGGTGGTGAAAGACGACGGCTCGCTGTCGCATATCCGCG
AGCTGCTGGGCCTGAAGCCCGACGAGAACAACTGA