Detailed information of component protein


Summary

Component ID T6CP016170
Component protein type Ct5D
T6SS ID (Type) T6SS01210 experimental (Type Unknown)
Strain Escherichia coli strain O157 zh165
Replicon chromosome
Sequence Protein sequence (313 a.a.); Nucleotide sequence (939 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5882..6820 (+)
NCBI ID 1062685045
GenBank KX118286
Uniprot ID A0A1C9CJ94_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
RHS PF03527.16 3.7e-15 46..83
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-312 MLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPARKIHLYHCDHRGLPLALISAEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLHGRYITQDPIGLKAGWNFYQYPLNPVINVDPQGLVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTGKGQNSFASQLAKELHTNVIGPDTLWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQGTPEKPSDIR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6827 - -


  Protein sequence: 313 a.a.    

>T6CP016170 KX118286:5882-6820 [Escherichia coli] [Ct5D]
MLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPARKIHLYHCDHRGLPLALISAEGATEWCAEYDEWGNLL
NEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLHGRYITQDPIGLKAGWNFYQYPLNPVINVDPQGLVDINLYPESD
LIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDLAYLIKFDGNYKDGMTVWLFSCNTGKGQNSFASQLAKELHTN
VIGPDTLWTWWGRGTNGKLKMDTVLTAPTNLNSNKDLMAITTKDLGNWITYGPSGHPISNMQGTPEKPSDIR*

  Nucleotide sequence: 939 bp    

>T6CP016170 KX118286:5882-6820 [Escherichia coli] [Ct5D]
ATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCT
GACTGTGGCGCAGATGCAAAGCCAGATGGACCCGGTATACACGCCGGCGCGAAAAATCCACCTGTACCACTGCGACCATC
GCGGCCTGCCGCTGGCGCTTATCAGTGCGGAAGGGGCAACAGAATGGTGCGCAGAATACGATGAATGGGGCAACCTGCTG
AATGAAGAGAACCCGCATCAGCTGCAGCAGCTTATCCGCCTGCCGGGGCAGCAGTATGATGAGGAGTCCGGCCTGTATTA
CAACCGCCACCGCTATTATGACCCGCTGCACGGGCGATATATCACTCAGGATCCGATTGGACTGAAGGCGGGATGGAATT
TTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCCCGAAAGTGAT
CTTATCCATTCTGTAGCTGATGAGATTAATATCCCAGGCGTTTTCACAATCGGGGGGCATGGTACCCCCACATCTATTGA
ATCCGCAACGCGCAGTATCATGACAGCTAAAGATCTAGCATATCTAATTAAATTTGATGGGAATTATAAAGATGGGATGA
CAGTTTGGTTATTTTCTTGTAATACAGGTAAAGGACAAAATTCATTTGCTAGCCAATTAGCTAAAGAGTTACATACAAAT
GTAATAGGACCTGACACGCTATGGACGTGGTGGGGGCGAGGAACTAATGGTAAGTTAAAAATGGATACAGTGCTAACAGC
ACCAACGAACCTTAATTCAAATAAGGATCTAATGGCTATAACAACAAAAGACCTTGGTAATTGGATAACATATGGGCCAT
CTGGGCACCCCATTTCTAATATGCAAGGTACGCCAGAAAAACCCAGTGATATAAGATAG