Detailed information of component protein
Summary
| Component ID | T6CP016167 |
| Component protein type | Ct5A |
| T6SS ID (Type) | T6SS01210  (Type Unknown) |
| Strain | Escherichia coli strain O157 zh165 |
| Replicon | chromosome |
| Sequence | Protein sequence (203 a.a.); Nucleotide sequence (609 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 1..609 (-) |
| NCBI ID | 1062685042 |
| GenBank | KX118286 |
| Uniprot ID | C3SMV2_ECOLX |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GST_C | PF00043.27 | 3.9e-11 | 97..192 |
| GST_N_3 | PF13417.8 | 7.1e-11 | 3..71 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-202 | MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVTQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9794 | - | - |
Protein sequence: 203 a.a.
>T6CP016167 KX118286:c609-1 [Escherichia coli] [Ct5A]
MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVTQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAML
PRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA*
MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVTQFNPLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAML
PRDPLESLRVRKIEALADGIMDAGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA*
Nucleotide sequence: 609 bp
>T6CP016167 KX118286:c609-1 [Escherichia coli] [Ct5A]
ATGAAACTCGTCGGTAGCTACACCAGCCCGTTTGTACGCAAACTTTCTATTCTGTTGTTAGAAAAGGGCATAACTTTCGA
ATTTATTAATGAACTGCCCTATAACGCGGACAACGGCGTGACGCAATTTAACCCGTTAGGAAAAGTGCCGGTGCTGGTGA
CCGAAGAGGGCGAATGCTGGTTTGATTCGCCGATCATCGCTGAATATATTGAATTAATGAATGTCGCTCCGGCGATGTTG
CCGCGCGATCCGCTGGAGTCGTTGCGGGTGCGCAAAATTGAGGCACTGGCGGATGGCATTATGGATGCCGGGCTGGTATC
GGTGCGTGAACAGGCGCGTCCAGCGGCGCAGCAGTCTGAAGATGAATTGTTACGCCAGCGGGAGAAAATCAACCGCAGTC
TGGATGTGCTGGAAGGATATCTGGTCGATGGCACACTCAAAACCGATACGGTCAATCTGGCGACTATCGCCATTGCCTGT
GCCGTCGGATATCTCAATTTCCGCCGCGTTGCGCCAGGTTGGTGTGTCGACCGCCCACACTTAGTCAAACTGGTCGAAAA
CCTGTTTAGCCGCGAAAGTTTTGCTCGCACCGAACCGCCAAAGGCTTGA
ATGAAACTCGTCGGTAGCTACACCAGCCCGTTTGTACGCAAACTTTCTATTCTGTTGTTAGAAAAGGGCATAACTTTCGA
ATTTATTAATGAACTGCCCTATAACGCGGACAACGGCGTGACGCAATTTAACCCGTTAGGAAAAGTGCCGGTGCTGGTGA
CCGAAGAGGGCGAATGCTGGTTTGATTCGCCGATCATCGCTGAATATATTGAATTAATGAATGTCGCTCCGGCGATGTTG
CCGCGCGATCCGCTGGAGTCGTTGCGGGTGCGCAAAATTGAGGCACTGGCGGATGGCATTATGGATGCCGGGCTGGTATC
GGTGCGTGAACAGGCGCGTCCAGCGGCGCAGCAGTCTGAAGATGAATTGTTACGCCAGCGGGAGAAAATCAACCGCAGTC
TGGATGTGCTGGAAGGATATCTGGTCGATGGCACACTCAAAACCGATACGGTCAATCTGGCGACTATCGCCATTGCCTGT
GCCGTCGGATATCTCAATTTCCGCCGCGTTGCGCCAGGTTGGTGTGTCGACCGCCCACACTTAGTCAAACTGGTCGAAAA
CCTGTTTAGCCGCGAAAGTTTTGCTCGCACCGAACCGCCAAAGGCTTGA