Detailed information of component protein
Summary
| Component ID | T6CP016164 |
| Component protein type | Vt6B |
| T6SS ID (Type) | T6SS00947  (Type Unknown) |
| Strain | Escherichia coli strain PE050 |
| Replicon | chromosome I |
| Sequence | Protein sequence (218 a.a.); Nucleotide sequence (654 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 2514..3167 (+) |
| NCBI ID | 1062685203 |
| GenBank | KX118292 |
| Uniprot ID | A0A0J2B9J7_ECOLX |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| Amidase_2 | PF01510.27 | 6.9e-12 | 77..210 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-217 | MSKNVILSNGERENPSPLIYDKHKKHCIFRTKTLLSEEKKEDEKCTVSVVFIDHEGYIRNAGIIKHTVPELEEGRMPKINAIILHRTDSSTINGTLASFSKGIGAHFIVEKDGNIYQAASLFVYTSHVGKIKSRCKEEKTWSSEEKKKIEAFGWNAKKIHDHEKIKQYPYRYPYNMDSVGIEVIALYDKKNKKWESATDSQKKSIEKLVDIIKIFMS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9928 | - | - |
Protein sequence: 218 a.a.
>T6CP016164 KX118292:2514-3167 [Escherichia coli] [Vt6B]
MSKNVILSNGERENPSPLIYDKHKKHCIFRTKTLLSEEKKEDEKCTVSVVFIDHEGYIRNAGIIKHTVPELEEGRMPKIN
AIILHRTDSSTINGTLASFSKGIGAHFIVEKDGNIYQAASLFVYTSHVGKIKSRCKEEKTWSSEEKKKIEAFGWNAKKIH
DHEKIKQYPYRYPYNMDSVGIEVIALYDKKNKKWESATDSQKKSIEKLVDIIKIFMS*
MSKNVILSNGERENPSPLIYDKHKKHCIFRTKTLLSEEKKEDEKCTVSVVFIDHEGYIRNAGIIKHTVPELEEGRMPKIN
AIILHRTDSSTINGTLASFSKGIGAHFIVEKDGNIYQAASLFVYTSHVGKIKSRCKEEKTWSSEEKKKIEAFGWNAKKIH
DHEKIKQYPYRYPYNMDSVGIEVIALYDKKNKKWESATDSQKKSIEKLVDIIKIFMS*
Nucleotide sequence: 654 bp
>T6CP016164 KX118292:2514-3167 [Escherichia coli] [Vt6B]
ATGAGCAAAAATGTAATATTAAGTAATGGGGAAAGAGAAAATCCTTCTCCGCTGATCTATGACAAGCATAAAAAGCACTG
TATTTTTCGTACAAAGACATTACTTAGTGAAGAGAAAAAAGAAGACGAAAAATGTACTGTATCAGTTGTATTTATTGATC
ATGAGGGGTATATAAGAAATGCTGGAATTATAAAACACACAGTCCCTGAACTTGAAGAAGGTCGCATGCCTAAAATTAAT
GCAATAATATTGCATAGAACAGATTCTTCAACAATAAATGGTACACTTGCTAGTTTTTCTAAAGGCATTGGAGCTCATTT
TATTGTTGAAAAAGATGGTAATATATACCAGGCTGCAAGCCTATTTGTATATACCAGCCATGTGGGGAAGATAAAGTCTC
GATGTAAGGAGGAAAAAACATGGTCGTCTGAAGAAAAAAAGAAAATAGAGGCATTCGGATGGAATGCTAAGAAGATACAT
GATCATGAAAAAATTAAACAATATCCTTATAGATATCCATATAATATGGACAGTGTTGGCATTGAGGTTATTGCATTATA
TGATAAAAAAAATAAAAAATGGGAGTCTGCTACAGACTCTCAAAAAAAATCAATTGAGAAACTTGTAGATATAATAAAAA
TATTTATGAGTTAG
ATGAGCAAAAATGTAATATTAAGTAATGGGGAAAGAGAAAATCCTTCTCCGCTGATCTATGACAAGCATAAAAAGCACTG
TATTTTTCGTACAAAGACATTACTTAGTGAAGAGAAAAAAGAAGACGAAAAATGTACTGTATCAGTTGTATTTATTGATC
ATGAGGGGTATATAAGAAATGCTGGAATTATAAAACACACAGTCCCTGAACTTGAAGAAGGTCGCATGCCTAAAATTAAT
GCAATAATATTGCATAGAACAGATTCTTCAACAATAAATGGTACACTTGCTAGTTTTTCTAAAGGCATTGGAGCTCATTT
TATTGTTGAAAAAGATGGTAATATATACCAGGCTGCAAGCCTATTTGTATATACCAGCCATGTGGGGAAGATAAAGTCTC
GATGTAAGGAGGAAAAAACATGGTCGTCTGAAGAAAAAAAGAAAATAGAGGCATTCGGATGGAATGCTAAGAAGATACAT
GATCATGAAAAAATTAAACAATATCCTTATAGATATCCATATAATATGGACAGTGTTGGCATTGAGGTTATTGCATTATA
TGATAAAAAAAATAAAAAATGGGAGTCTGCTACAGACTCTCAAAAAAAATCAATTGAGAAACTTGTAGATATAATAAAAA
TATTTATGAGTTAG