Detailed information of component protein


Summary

Component ID T6CP016161
Component protein type Vt4D
T6SS ID (Type) T6SS00946 experimental (Type Unknown)
Strain Escherichia coli strain PE117
Replicon chromosome I
Sequence Protein sequence (405 a.a.); Nucleotide sequence (1215 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 3769..4983 (+)
NCBI ID 1062685232
GenBank KX118293
Uniprot ID A0A1C9CJE2_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-20 MPVRLNTIPDAESYPAPPAR
Transmembrane helix 21-43 IKWLSALLLMLSVGVAITSLFAS
Outside 44-52 DELAKNGPH
Transmembrane helix 53-75 FWGLACGVPAFIWSLVASVRWLF
Inside 76-404 FITQYIRADAWNKRREEVILQETRRGRRALQILSFSVQTALNGDSVAETTAAFLARQQVLNTYVDLRGEDTVRRSVIPVLTNKPVTGRLSEVFSRLFSDIRLQLTLLPDDFHINVLLETSTSLSESTVMAIWQDEWQKASLPEARLFSAPEPGLAAVDDWLDNFIQEKAVLLVISVRLEPKNPERTAESATALLLANRLTQTALTPLALLHRPERITDTEMMASGIAQALDWMPVQPDAISGIWTAELDREQRTALLSLNQPFAQEALMYELDAFLGRSGPAAPWLSVAAATLAAIQSQHPQLTLSGVQGGHYSWATVVSSFVSPQEAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9172 - -


  Protein sequence: 405 a.a.    

>T6CP016161 KX118293:3769-4983 [Escherichia coli] [Vt4D]
MPVRLNTIPDAESYPAPPARIKWLSALLLMLSVGVAITSLFASDELAKNGPHFWGLACGVPAFIWSLVASVRWLFFITQY
IRADAWNKRREEVILQETRRGRRALQILSFSVQTALNGDSVAETTAAFLARQQVLNTYVDLRGEDTVRRSVIPVLTNKPV
TGRLSEVFSRLFSDIRLQLTLLPDDFHINVLLETSTSLSESTVMAIWQDEWQKASLPEARLFSAPEPGLAAVDDWLDNFI
QEKAVLLVISVRLEPKNPERTAESATALLLANRLTQTALTPLALLHRPERITDTEMMASGIAQALDWMPVQPDAISGIWT
AELDREQRTALLSLNQPFAQEALMYELDAFLGRSGPAAPWLSVAAATLAAIQSQHPQLTLSGVQGGHYSWATVVSSFVSP
QEAS*

  Nucleotide sequence: 1215 bp    

>T6CP016161 KX118293:3769-4983 [Escherichia coli] [Vt4D]
ATGCCTGTCCGACTTAATACCATTCCCGACGCAGAATCCTATCCCGCACCGCCAGCCCGCATTAAATGGCTGTCAGCCTT
ATTACTGATGCTGTCTGTTGGTGTGGCAATAACCTCATTATTCGCCAGCGATGAACTGGCAAAAAACGGCCCGCATTTCT
GGGGGCTGGCCTGCGGTGTGCCTGCCTTTATCTGGTCGCTGGTTGCTTCAGTTCGCTGGTTGTTTTTTATCACGCAGTAC
ATTCGGGCTGATGCCTGGAATAAGCGCCGGGAAGAGGTGATTTTGCAGGAAACGCGACGGGGACGACGGGCGTTGCAGAT
ACTTAGTTTTTCCGTACAAACCGCGCTGAATGGTGATTCCGTCGCAGAAACCACAGCGGCGTTTCTGGCGCGTCAGCAGG
TGTTGAATACTTACGTTGATTTGCGCGGAGAAGATACCGTGCGTCGCAGTGTCATTCCCGTATTAACCAATAAACCGGTT
ACCGGACGTCTATCCGAAGTTTTTTCCCGTCTGTTCAGCGATATCAGGCTGCAACTGACGCTGCTACCCGATGATTTTCA
TATCAACGTGCTTTTAGAAACCAGTACGTCGCTTTCTGAGTCAACGGTTATGGCTATCTGGCAGGACGAATGGCAAAAAG
CCAGCCTCCCCGAAGCCCGTCTGTTTTCTGCCCCGGAGCCGGGGCTGGCCGCCGTGGACGACTGGCTGGACAACTTTATT
CAGGAAAAGGCCGTACTGCTGGTGATTTCCGTACGACTTGAACCGAAGAACCCGGAACGGACGGCAGAATCCGCCACCGC
GCTGTTGCTGGCAAACCGACTGACGCAAACCGCGCTTACGCCGCTGGCCCTGCTGCATCGTCCTGAACGTATCACTGATA
CAGAGATGATGGCGTCAGGCATTGCACAGGCGCTGGACTGGATGCCGGTGCAGCCAGATGCCATATCCGGCATATGGACT
GCCGAACTGGACAGGGAACAGCGTACCGCGTTGTTAAGCCTGAACCAGCCGTTTGCTCAGGAAGCCCTGATGTACGAGCT
GGATGCCTTTCTGGGGCGCTCCGGACCGGCTGCGCCGTGGCTGTCCGTCGCTGCGGCAACGCTGGCGGCAATACAATCAC
AACACCCCCAACTGACGCTCAGCGGCGTTCAGGGCGGGCATTATTCATGGGCGACCGTGGTGTCGTCATTCGTTTCCCCA
CAGGAGGCATCATAG