Detailed information of component protein
Summary
| Component ID | T6CP016160 |
| Component protein type | Vt4C |
| T6SS ID (Type) | T6SS00946  (Type Unknown) |
| Strain | Escherichia coli strain PE117 |
| Replicon | chromosome I |
| Sequence | Protein sequence (184 a.a.); Nucleotide sequence (552 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 3140..3691 (+) |
| NCBI ID | 1062685231 |
| GenBank | KX118293 |
| Uniprot ID | A0A1X9VAW9_ECOLX |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-183 | MRIMLILLCFFSFPCFSGDKIKIVKTCQLKKNESVQLLSLRTIDGDTLYLKFRNVITGAFLDTPTKSYDFFGDVVLSQCINGSLIFALEYGSPYIKGCLVTGWENGFKGKNSPEGFCFAERNIPEAVWFGKNNILIIIRNQMDVGTWKGKYIIYDNAKKSGERAYSSDNLPSKDGYIIFALNK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.6332 | pos: 14-15. SFP-CF. | MRIMLILLCFFSFP |
Protein sequence: 184 a.a.
>T6CP016160 KX118293:3140-3691 [Escherichia coli] [Vt4C]
MRIMLILLCFFSFPCFSGDKIKIVKTCQLKKNESVQLLSLRTIDGDTLYLKFRNVITGAFLDTPTKSYDFFGDVVLSQCI
NGSLIFALEYGSPYIKGCLVTGWENGFKGKNSPEGFCFAERNIPEAVWFGKNNILIIIRNQMDVGTWKGKYIIYDNAKKS
GERAYSSDNLPSKDGYIIFALNK*
MRIMLILLCFFSFPCFSGDKIKIVKTCQLKKNESVQLLSLRTIDGDTLYLKFRNVITGAFLDTPTKSYDFFGDVVLSQCI
NGSLIFALEYGSPYIKGCLVTGWENGFKGKNSPEGFCFAERNIPEAVWFGKNNILIIIRNQMDVGTWKGKYIIYDNAKKS
GERAYSSDNLPSKDGYIIFALNK*
Nucleotide sequence: 552 bp
>T6CP016160 KX118293:3140-3691 [Escherichia coli] [Vt4C]
ATGCGCATTATGTTAATATTACTTTGTTTTTTTTCTTTCCCCTGTTTTTCAGGCGATAAGATTAAAATCGTGAAAACCTG
TCAACTGAAAAAAAATGAAAGTGTGCAGTTGCTTTCCCTTAGAACCATTGACGGTGATACATTATATCTAAAATTCAGAA
ATGTTATCACCGGGGCCTTTTTAGATACTCCAACTAAAAGTTATGATTTTTTTGGAGATGTGGTTCTTTCTCAGTGCATA
AATGGTTCTCTTATCTTTGCGCTGGAATATGGTTCTCCATATATAAAAGGTTGTCTGGTAACTGGTTGGGAAAATGGGTT
TAAAGGTAAGAACTCTCCTGAAGGCTTTTGTTTCGCAGAGAGAAATATTCCCGAAGCGGTATGGTTTGGAAAAAACAATA
TTTTAATTATCATCCGAAACCAAATGGATGTTGGGACATGGAAAGGGAAATATATTATCTATGATAATGCGAAAAAGTCA
GGAGAAAGAGCATACTCATCAGATAATCTACCATCAAAAGATGGTTACATAATTTTTGCATTAAATAAATAA
ATGCGCATTATGTTAATATTACTTTGTTTTTTTTCTTTCCCCTGTTTTTCAGGCGATAAGATTAAAATCGTGAAAACCTG
TCAACTGAAAAAAAATGAAAGTGTGCAGTTGCTTTCCCTTAGAACCATTGACGGTGATACATTATATCTAAAATTCAGAA
ATGTTATCACCGGGGCCTTTTTAGATACTCCAACTAAAAGTTATGATTTTTTTGGAGATGTGGTTCTTTCTCAGTGCATA
AATGGTTCTCTTATCTTTGCGCTGGAATATGGTTCTCCATATATAAAAGGTTGTCTGGTAACTGGTTGGGAAAATGGGTT
TAAAGGTAAGAACTCTCCTGAAGGCTTTTGTTTCGCAGAGAGAAATATTCCCGAAGCGGTATGGTTTGGAAAAAACAATA
TTTTAATTATCATCCGAAACCAAATGGATGTTGGGACATGGAAAGGGAAATATATTATCTATGATAATGCGAAAAAGTCA
GGAGAAAGAGCATACTCATCAGATAATCTACCATCAAAAGATGGTTACATAATTTTTGCATTAAATAAATAA