Detailed information of component protein


Summary

Component ID T6CP016156
Component protein type Het5
T6SS ID (Type) T6SS00944 experimental (Type Unknown)
Strain Escherichia coli strain PE086
Replicon chromosome I
Sequence Protein sequence (97 a.a.); Nucleotide sequence (291 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 2553..2843 (+)
NCBI ID 1062685127
GenBank KX118289
Uniprot ID A0A1C9CJM2_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Colicin_Pyocin PF01320.20 7e-27 4..93
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-96 MYNFKDKIEDYTEREFIELLGEFTNPTGDNAQLKGEVLDKYWDDLEEHLTRITQHPLMSDLIYYPAKKGDDEPENILKIVKEWRRSQGLPLFKDSK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9883 - -


  Protein sequence: 97 a.a.    

>T6CP016156 KX118289:2553-2843 [Escherichia coli] [Het5]
MYNFKDKIEDYTEREFIELLGEFTNPTGDNAQLKGEVLDKYWDDLEEHLTRITQHPLMSDLIYYPAKKGDDEPENILKIV
KEWRRSQGLPLFKDSK*

  Nucleotide sequence: 291 bp    

>T6CP016156 KX118289:2553-2843 [Escherichia coli] [Het5]
ATGTATAATTTTAAAGATAAAATAGAAGATTACACAGAGCGGGAATTCATTGAGTTGCTTGGCGAGTTTACAAATCCAAC
CGGGGATAACGCTCAATTAAAAGGGGAAGTGCTTGACAAATATTGGGATGATCTAGAAGAACATCTTACCAGAATTACAC
AACATCCGTTGATGAGCGATCTTATCTACTATCCTGCAAAGAAGGGAGATGATGAACCTGAAAACATCCTGAAAATTGTC
AAAGAATGGCGGCGTTCACAGGGGCTACCCTTGTTTAAAGACTCTAAATAA