Detailed information of component protein


Summary

Component ID T6CP016155
Component protein type Het4
T6SS ID (Type) T6SS00944 experimental (Type Unknown)
Strain Escherichia coli strain PE086
Replicon chromosome I
Sequence Protein sequence (74 a.a.); Nucleotide sequence (222 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 2331..2552 (+)
NCBI ID 1062685126
GenBank KX118289
Uniprot ID A0A1C9CJM1_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-73 MIAQFSSGNQTRIKQVLIAKAPLEGWHYGTKEIVKKFHMYHRVAIEYSGGIYDIDNLRRAHLICMMKFITGDS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -


  Protein sequence: 74 a.a.    

>T6CP016155 KX118289:2331-2552 [Escherichia coli] [Het4]
MIAQFSSGNQTRIKQVLIAKAPLEGWHYGTKEIVKKFHMYHRVAIEYSGGIYDIDNLRRAHLICMMKFITGDS*

  Nucleotide sequence: 222 bp    

>T6CP016155 KX118289:2331-2552 [Escherichia coli] [Het4]
TTGATAGCGCAGTTTTCAAGCGGTAATCAAACACGTATAAAACAAGTGTTAATCGCAAAAGCACCACTTGAAGGTTGGCA
TTATGGCACTAAAGAAATCGTTAAAAAATTCCACATGTATCATCGTGTTGCGATTGAATATAGTGGCGGAATTTACGATA
TTGATAATTTAAGGAGGGCACACCTCATTTGCATGATGAAATTTATTACAGGAGATAGTTAA