Detailed information of component protein


Summary

Component ID T6CP016152
Component protein type Het1
T6SS ID (Type) T6SS00944 experimental (Type Unknown)
Strain Escherichia coli strain PE086
Replicon chromosome I
Sequence Protein sequence (450 a.a.); Nucleotide sequence (1350 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 81..1430 (+)
NCBI ID 1062685123
GenBank KX118289
Uniprot ID A0A1C9CJD4_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pyocin_S PF06958.14 9e-23 309..416
T6SS_HCP PF05638.14 3.2e-13 28..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-449 VGDIVYLRIIGEKQGDISSGCGTYASVGNRWQVGHEDEIFAFALTNAITSTGNGVNLQGLQFCKLIDKSSPLLSNAINQNERLFIEIDLYRINKSGRWERYYYIQLRNASLTAIHVNISDNNLPTECVTVDYDYILCKHLIANTEFDWLAFPAGYNSLFIPPKSPPASNLKPEPLPVVNLPLSSPAVNPVYAKSCLKVKGCTDAGTAEEPAENFGQVAIFVQPVVDDCCGYHHPEANVIGEPAEAQTMLLFPSSVLATQIWGKWSLSGVLSATRGSYIGALASALYIPSAGEGSARVPGRDEFWYEEELRQKALAGSTATTRVRFFWGTDIHGKPQVYGVHTGEGTPYENVRVANMQWNEQTQRYEFTPAHDVDGPLITWTPENPEHGNVPGHTGNDRPPLEQPTILVTPIPDGTDTYRRHSRFLIRKNSTIIFWFFRRDPVLSLSMFT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9790 - -


  Protein sequence: 450 a.a.    

>T6CP016152 KX118289:81-1430 [Escherichia coli] [Het1]
VGDIVYLRIIGEKQGDISSGCGTYASVGNRWQVGHEDEIFAFALTNAITSTGNGVNLQGLQFCKLIDKSSPLLSNAINQN
ERLFIEIDLYRINKSGRWERYYYIQLRNASLTAIHVNISDNNLPTECVTVDYDYILCKHLIANTEFDWLAFPAGYNSLFI
PPKSPPASNLKPEPLPVVNLPLSSPAVNPVYAKSCLKVKGCTDAGTAEEPAENFGQVAIFVQPVVDDCCGYHHPEANVIG
EPAEAQTMLLFPSSVLATQIWGKWSLSGVLSATRGSYIGALASALYIPSAGEGSARVPGRDEFWYEEELRQKALAGSTAT
TRVRFFWGTDIHGKPQVYGVHTGEGTPYENVRVANMQWNEQTQRYEFTPAHDVDGPLITWTPENPEHGNVPGHTGNDRPP
LEQPTILVTPIPDGTDTYRRHSRFLIRKNSTIIFWFFRRDPVLSLSMFT*

  Nucleotide sequence: 1350 bp    

>T6CP016152 KX118289:81-1430 [Escherichia coli] [Het1]
GTGGGCGATATTGTTTACCTGAGAATAATCGGTGAGAAGCAGGGCGATATTTCTTCAGGCTGTGGGACGTATGCGTCGGT
TGGTAATCGCTGGCAGGTTGGCCATGAAGATGAAATTTTTGCCTTTGCACTCACCAACGCCATTACCAGTACTGGTAATG
GCGTTAATCTACAGGGGCTACAATTTTGCAAACTCATTGATAAAAGCTCACCGCTACTGTCTAATGCCATCAATCAGAAT
GAGCGGTTATTTATTGAAATCGATTTGTATCGTATAAATAAAAGCGGGCGATGGGAACGGTATTATTATATTCAGCTAAG
AAATGCTTCATTAACTGCTATTCATGTAAACATTTCTGACAATAATCTTCCTACCGAATGTGTAACTGTCGATTATGACT
ACATATTATGTAAACATCTCATAGCCAATACGGAATTTGACTGGTTGGCCTTTCCTGCTGGCTATAATAGCTTATTTATT
CCGCCTAAAAGTCCACCTGCCAGTAATCTTAAGCCTGAACCGCTACCAGTTGTTAACCTTCCACTCTCTTCACCAGCGGT
TAACCCGGTCTATGCCAAATCCTGTCTGAAGGTGAAGGGATGTACAGATGCCGGAACGGCAGAAGAACCCGCTGAAAACT
TCGGTCAAGTAGCGATTTTCGTTCAGCCAGTGGTTGATGACTGCTGTGGATACCACCATCCCGAGGCTAACGTTATCGGG
GAACCCGCAGAAGCTCAAACCATGCTACTGTTCCCGAGTAGTGTGTTGGCGACTCAAATATGGGGAAAATGGTCGCTCAG
TGGCGTACTCAGTGCAACCCGCGGCTCTTACATCGGTGCGTTGGCATCTGCTCTGTATATTCCCTCTGCGGGTGAGGGCA
GTGCTCGTGTGCCTGGACGTGATGAGTTCTGGTATGAGGAAGAACTGCGGCAGAAAGCACTAGCAGGCAGTACCGCCACC
ACCCGGGTGCGTTTTTTCTGGGGAACTGACATTCACGGCAAGCCTCAGGTGTATGGTGTTCATACGGGTGAAGGTACGCC
GTATGAAAACGTCCGCGTGGCGAACATGCAGTGGAACGAGCAGACGCAGCGTTATGAATTTACCCCCGCTCACGATGTCG
ATGGCCCCCTGATTACCTGGACGCCGGAAAATCCGGAACATGGGAATGTTCCGGGCCATACCGGTAACGACAGGCCGCCG
CTGGAGCAGCCCACCATTCTGGTGACGCCGATTCCGGACGGCACCGATACCTATCGCCGCCATTCCCGGTTCCTGATCCG
AAAGAATTCAACGATTATATTCTGGTTTTTCCGGCGGGATCCGGTATTAAGCCTATCTATGTTTACCTGA