Detailed information of component protein


Summary

Component ID T6CP016149
Component protein type Ct3D
T6SS ID (Type) T6SS00942 experimental (Type Unknown)
Strain Escherichia coli strain PE027
Replicon chromosome I
Sequence Protein sequence (122 a.a.); Nucleotide sequence (366 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 7212..7577 (+)
NCBI ID 1062685078
GenBank KX118287
Uniprot ID A0A0F3UVK4_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-121 MSRYILIRGWFECDFEQVKKIKEANEEFFKHSEKYLLPENTKRLYLNGWCYPEYPINWVSVISLGVNINQIAFDYIKDMIVNVSKTERLDGYFRVNDDEDNLFLEWIVKDGYLEEIILSGS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9920 - -


  Protein sequence: 122 a.a.    

>T6CP016149 KX118287:7212-7577 [Escherichia coli] [Ct3D]
MSRYILIRGWFECDFEQVKKIKEANEEFFKHSEKYLLPENTKRLYLNGWCYPEYPINWVSVISLGVNINQIAFDYIKDMI
VNVSKTERLDGYFRVNDDEDNLFLEWIVKDGYLEEIILSGS*

  Nucleotide sequence: 366 bp    

>T6CP016149 KX118287:7212-7577 [Escherichia coli] [Ct3D]
ATGTCAAGATATATACTTATTAGAGGTTGGTTTGAGTGCGACTTTGAACAAGTAAAAAAAATAAAAGAAGCTAATGAAGA
ATTTTTCAAACATTCTGAAAAATATTTATTACCAGAAAACACGAAACGACTTTATTTAAATGGGTGGTGTTACCCAGAAT
ATCCTATCAACTGGGTTAGCGTTATTTCCTTAGGTGTTAATATAAATCAAATTGCATTTGATTATATAAAAGACATGATT
GTAAATGTTTCAAAAACTGAAAGATTGGATGGTTATTTTCGTGTGAATGATGATGAAGATAATTTATTCTTAGAATGGAT
TGTAAAAGATGGTTATTTAGAGGAAATAATTTTGTCTGGTTCATAA