Detailed information of component protein


Summary

Component ID T6CP016145
Component protein type Ct1E
T6SS ID (Type) T6SS00941 experimental (Type Unknown)
Strain Escherichia coli strain STEC004
Replicon chromosome I
Sequence Protein sequence (104 a.a.); Nucleotide sequence (312 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 7636..7947 (+)
NCBI ID 1062685109
GenBank KX118288
Uniprot ID J7QN32_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-103 MEIVIYITISILILDIALIKQRMLANIETSNPYHAQYILRRRDDYLVLFDRDALSCRFFYDAFPGMRLRHQVTGDTDDDRLAHSPADRMYTGKDHQKYTFCTK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9614 - -


  Protein sequence: 104 a.a.    

>T6CP016145 KX118288:7636-7947 [Escherichia coli] [Ct1E]
MEIVIYITISILILDIALIKQRMLANIETSNPYHAQYILRRRDDYLVLFDRDALSCRFFYDAFPGMRLRHQVTGDTDDDR
LAHSPADRMYTGKDHQKYTFCTK*

  Nucleotide sequence: 312 bp    

>T6CP016145 KX118288:7636-7947 [Escherichia coli] [Ct1E]
ATGGAAATAGTGATATACATCACTATTTCCATCCTGATTTTAGATATCGCATTAATAAAACAGCGGATGTTAGCCAATAT
CGAAACCAGTAACCCGTATCACGCCCAGTACATCCTGCGCCGCCGCGATGATTACCTGGTGCTGTTCGACCGTGATGCCC
TGAGCTGCCGCTTCTTTTATGACGCCTTTCCGGGAATGCGTCTGCGCCACCAGGTGACCGGCGATACCGACGATGACCGC
CTGGCACACAGCCCCGCAGACCGGATGTATACAGGGAAAGATCATCAGAAGTACACTTTTTGTACTAAATAA