Detailed information of component protein


Summary

Component ID T6CP016144
Component protein type Ct1D
T6SS ID (Type) T6SS00941 experimental (Type Unknown)
Strain Escherichia coli strain STEC004
Replicon chromosome I
Sequence Protein sequence (84 a.a.); Nucleotide sequence (252 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 7270..7521 (+)
NCBI ID 1062685108
GenBank KX118288
Uniprot ID A0A1C9CJD5_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-83 MIKHNKITIEMALDLARRELELREIPYIKNSLHANYSYKSISIGSKQGWLISAKLKVPETFEPDMIFIEISDPEGFINIPDVL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9927 - -


  Protein sequence: 84 a.a.    

>T6CP016144 KX118288:7270-7521 [Escherichia coli] [Ct1D]
MIKHNKITIEMALDLARRELELREIPYIKNSLHANYSYKSISIGSKQGWLISAKLKVPETFEPDMIFIEISDPEGFINIP
DVL*

  Nucleotide sequence: 252 bp    

>T6CP016144 KX118288:7270-7521 [Escherichia coli] [Ct1D]
TTGATAAAACATAACAAAATAACTATCGAAATGGCTCTTGACTTGGCTCGGCGTGAGTTAGAGTTAAGGGAAATTCCTTA
TATTAAAAATAGTCTACATGCCAATTACAGCTATAAATCTATTAGTATTGGTTCTAAGCAAGGTTGGTTAATTTCAGCGA
AATTAAAAGTCCCTGAAACTTTTGAGCCTGATATGATATTTATTGAGATATCTGACCCAGAAGGTTTTATTAATATTCCT
GATGTATTATAA