Detailed information of component protein


Summary

Component ID T6CP016040
Component protein type TssC
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (494 a.a.); Nucleotide sequence (1482 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AMS64_RS11340
Coordinate (Strand) 2476265..2477746 (-)
NCBI ID WP_064336282.1
RefSeq NZ_CP012504
Uniprot ID A0A2S3XL20_9GAMM
KEGG ID avo:AMS64_11320
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.2e-128 67..366
VipB_2 PF18945.2 4.7e-45 379..490

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-493 MSLVEEQVQAGAGAASSSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQMDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPIGAVIGDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDSRYLGLTAPRFLARLPYDPTENPIKGFNYKEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGASFELSLVGRLDKE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9516 - -



  Protein sequence: 494 a.a.    

>T6CP016040 NZ_CP012504:c2477746-2476265 [Aeromonas veronii] [TssC]
MSLVEEQVQAGAGAASSSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQ
MDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPIGAV
IGDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDSRYLGLT
APRFLARLPYDPTENPIKGFNYKEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMG
QLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLA
HYIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGA
SFELSLVGRLDKE*

  Nucleotide sequence: 1482 bp    

>T6CP016040 NZ_CP012504:c2477746-2476265 [Aeromonas veronii] [TssC]
ATGTCTTTGGTCGAAGAACAGGTTCAAGCGGGGGCGGGTGCAGCCTCCTCGTCCTCTTTGCTGGACGAAATCATGGCGCA
GGCTCGCATCACACCGGTTGATGAGGGGTACAGTGTTGCCAAGCAGGGTGTGGCTGCGCTTATCGCCAACATTCTGGACA
GCGGTACCACCAGCGAGCCGGTCAACAAGGCATTGGTTGACAGCATGATTGTCGAGCTCGATAAGAAGCTGAGCAAGCAG
ATGGACGTCATCCTGCATGCCAAAGAGCTGCAAGAGATGGAATCCTCCTGGCGCTCCCTCAAGCTGTTGGTAGATCGCAC
CGATTTTCGTGAAAACATCAAGATCCAGGTGCTGCACGCTACTAAGGAAGAGCTGCTGGAAGATTTCGAGTTTTCCCCGG
AGATCACCCAGTCCGGTCTCTACAAGCATGTCTATTCTACCGGCTACGGCCAATTCGGCGGTCAGCCGATCGGTGCCGTG
ATCGGTGACTACGCCTTTACCCACAGCTCCCCTGACATCAAGCTGATGCAGTATGTCAGTGCCGTCGGTGCCATGGCCCA
CGCCCCCTTCATCTCCTCTGTCGCCCCCGCTTTCTTCGGCGTTGACAGCTTCACCGATCTGCCCTCCATCAAGGATCTGA
AATCGGTGTTCGAAGGACCGGCCTACACCAAATGGCGTTCCCTGCGTGAATCGGAAGATTCCCGCTATCTGGGTCTGACT
GCGCCGCGTTTCCTGGCCCGTCTGCCCTACGATCCGACCGAGAACCCCATCAAGGGCTTCAACTACAAGGAAGATATCAG
CTCGGATCACGACCACTACCTGTGGGGCAATACTGCCTATCTGATGGGCACTTCCCTGACCGACAGCTTCGCCAAGTACC
GCTGGTGCCCGAACATCATCGGCCCGCAGAGCGGTGGTGCCATCCACGATCTGCCGGTGCACGTCTATGAGGCGATGGGT
CAGCTGCAGGCGAAGATCCCGACAGAGGTGCTCATCACCGACCGTCGCGAGTATGAGCTCTCCGAAGAGGGTTTCATCAC
CCTGACCATGCGCAAGGACAGCGACAACGCCGCCTTCTTCTCTGCCAACTCGGTACAAAAGCCCAAGGTGTTCCCCAACA
CCAAAGAGGGCAAAGAGGCAGAGACCAACTACAAGCTGGGTACCCAGCTGCCCTACATGTTCATCATCAACCGTCTGGCG
CACTACATCAAAGTGCTGCAGCGCGAGCAGATCGGCTCCTGGAAGGAGCGTCAGGATCTGGAGCGTGAACTAAACGGCTG
GATCAAGCAGTACGTTGCAGACCAAGAGAACCCGCCGGCAGACGTCCGTAGCCGTCGTCCGTTGCGCGCCGCCCAGATCA
AGGTGCTGGATGTGGAAGGGGAGCCGGGCTGGTACCAGGTTGCCATGGCCGTGCGCCCGCACTTCAAGTACATGGGGGCG
AGCTTCGAGCTCTCTCTGGTAGGTCGACTGGACAAGGAATAA