Detailed information of component protein
Summary
Component ID | T6CP016040 |
Component protein type | TssC |
T6SS ID (Type) | T6SS01208 (Type i1) |
Strain | Aeromonas veronii strain TH0426 |
Replicon | chromosome |
Sequence | Protein sequence (494 a.a.); Nucleotide sequence (1482 bp) |
Reference |
External database links
Locus tag (Gene) | AMS64_RS11340 |
Coordinate (Strand) | 2476265..2477746 (-) |
NCBI ID | WP_064336282.1 |
RefSeq | NZ_CP012504 |
Uniprot ID | A0A2S3XL20_9GAMM |
KEGG ID | avo:AMS64_11320 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 6.2e-128 | 67..366 |
VipB_2 | PF18945.2 | 4.7e-45 | 379..490 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-493 | MSLVEEQVQAGAGAASSSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQMDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPIGAVIGDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDSRYLGLTAPRFLARLPYDPTENPIKGFNYKEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGASFELSLVGRLDKE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9516 | - | - |
Protein sequence: 494 a.a.
>T6CP016040 NZ_CP012504:c2477746-2476265 [Aeromonas veronii] [TssC]
MSLVEEQVQAGAGAASSSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQ
MDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPIGAV
IGDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDSRYLGLT
APRFLARLPYDPTENPIKGFNYKEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMG
QLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLA
HYIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGA
SFELSLVGRLDKE*
MSLVEEQVQAGAGAASSSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQ
MDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPIGAV
IGDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDSRYLGLT
APRFLARLPYDPTENPIKGFNYKEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMG
QLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLA
HYIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGA
SFELSLVGRLDKE*
Nucleotide sequence: 1482 bp
>T6CP016040 NZ_CP012504:c2477746-2476265 [Aeromonas veronii] [TssC]
ATGTCTTTGGTCGAAGAACAGGTTCAAGCGGGGGCGGGTGCAGCCTCCTCGTCCTCTTTGCTGGACGAAATCATGGCGCA
GGCTCGCATCACACCGGTTGATGAGGGGTACAGTGTTGCCAAGCAGGGTGTGGCTGCGCTTATCGCCAACATTCTGGACA
GCGGTACCACCAGCGAGCCGGTCAACAAGGCATTGGTTGACAGCATGATTGTCGAGCTCGATAAGAAGCTGAGCAAGCAG
ATGGACGTCATCCTGCATGCCAAAGAGCTGCAAGAGATGGAATCCTCCTGGCGCTCCCTCAAGCTGTTGGTAGATCGCAC
CGATTTTCGTGAAAACATCAAGATCCAGGTGCTGCACGCTACTAAGGAAGAGCTGCTGGAAGATTTCGAGTTTTCCCCGG
AGATCACCCAGTCCGGTCTCTACAAGCATGTCTATTCTACCGGCTACGGCCAATTCGGCGGTCAGCCGATCGGTGCCGTG
ATCGGTGACTACGCCTTTACCCACAGCTCCCCTGACATCAAGCTGATGCAGTATGTCAGTGCCGTCGGTGCCATGGCCCA
CGCCCCCTTCATCTCCTCTGTCGCCCCCGCTTTCTTCGGCGTTGACAGCTTCACCGATCTGCCCTCCATCAAGGATCTGA
AATCGGTGTTCGAAGGACCGGCCTACACCAAATGGCGTTCCCTGCGTGAATCGGAAGATTCCCGCTATCTGGGTCTGACT
GCGCCGCGTTTCCTGGCCCGTCTGCCCTACGATCCGACCGAGAACCCCATCAAGGGCTTCAACTACAAGGAAGATATCAG
CTCGGATCACGACCACTACCTGTGGGGCAATACTGCCTATCTGATGGGCACTTCCCTGACCGACAGCTTCGCCAAGTACC
GCTGGTGCCCGAACATCATCGGCCCGCAGAGCGGTGGTGCCATCCACGATCTGCCGGTGCACGTCTATGAGGCGATGGGT
CAGCTGCAGGCGAAGATCCCGACAGAGGTGCTCATCACCGACCGTCGCGAGTATGAGCTCTCCGAAGAGGGTTTCATCAC
CCTGACCATGCGCAAGGACAGCGACAACGCCGCCTTCTTCTCTGCCAACTCGGTACAAAAGCCCAAGGTGTTCCCCAACA
CCAAAGAGGGCAAAGAGGCAGAGACCAACTACAAGCTGGGTACCCAGCTGCCCTACATGTTCATCATCAACCGTCTGGCG
CACTACATCAAAGTGCTGCAGCGCGAGCAGATCGGCTCCTGGAAGGAGCGTCAGGATCTGGAGCGTGAACTAAACGGCTG
GATCAAGCAGTACGTTGCAGACCAAGAGAACCCGCCGGCAGACGTCCGTAGCCGTCGTCCGTTGCGCGCCGCCCAGATCA
AGGTGCTGGATGTGGAAGGGGAGCCGGGCTGGTACCAGGTTGCCATGGCCGTGCGCCCGCACTTCAAGTACATGGGGGCG
AGCTTCGAGCTCTCTCTGGTAGGTCGACTGGACAAGGAATAA
ATGTCTTTGGTCGAAGAACAGGTTCAAGCGGGGGCGGGTGCAGCCTCCTCGTCCTCTTTGCTGGACGAAATCATGGCGCA
GGCTCGCATCACACCGGTTGATGAGGGGTACAGTGTTGCCAAGCAGGGTGTGGCTGCGCTTATCGCCAACATTCTGGACA
GCGGTACCACCAGCGAGCCGGTCAACAAGGCATTGGTTGACAGCATGATTGTCGAGCTCGATAAGAAGCTGAGCAAGCAG
ATGGACGTCATCCTGCATGCCAAAGAGCTGCAAGAGATGGAATCCTCCTGGCGCTCCCTCAAGCTGTTGGTAGATCGCAC
CGATTTTCGTGAAAACATCAAGATCCAGGTGCTGCACGCTACTAAGGAAGAGCTGCTGGAAGATTTCGAGTTTTCCCCGG
AGATCACCCAGTCCGGTCTCTACAAGCATGTCTATTCTACCGGCTACGGCCAATTCGGCGGTCAGCCGATCGGTGCCGTG
ATCGGTGACTACGCCTTTACCCACAGCTCCCCTGACATCAAGCTGATGCAGTATGTCAGTGCCGTCGGTGCCATGGCCCA
CGCCCCCTTCATCTCCTCTGTCGCCCCCGCTTTCTTCGGCGTTGACAGCTTCACCGATCTGCCCTCCATCAAGGATCTGA
AATCGGTGTTCGAAGGACCGGCCTACACCAAATGGCGTTCCCTGCGTGAATCGGAAGATTCCCGCTATCTGGGTCTGACT
GCGCCGCGTTTCCTGGCCCGTCTGCCCTACGATCCGACCGAGAACCCCATCAAGGGCTTCAACTACAAGGAAGATATCAG
CTCGGATCACGACCACTACCTGTGGGGCAATACTGCCTATCTGATGGGCACTTCCCTGACCGACAGCTTCGCCAAGTACC
GCTGGTGCCCGAACATCATCGGCCCGCAGAGCGGTGGTGCCATCCACGATCTGCCGGTGCACGTCTATGAGGCGATGGGT
CAGCTGCAGGCGAAGATCCCGACAGAGGTGCTCATCACCGACCGTCGCGAGTATGAGCTCTCCGAAGAGGGTTTCATCAC
CCTGACCATGCGCAAGGACAGCGACAACGCCGCCTTCTTCTCTGCCAACTCGGTACAAAAGCCCAAGGTGTTCCCCAACA
CCAAAGAGGGCAAAGAGGCAGAGACCAACTACAAGCTGGGTACCCAGCTGCCCTACATGTTCATCATCAACCGTCTGGCG
CACTACATCAAAGTGCTGCAGCGCGAGCAGATCGGCTCCTGGAAGGAGCGTCAGGATCTGGAGCGTGAACTAAACGGCTG
GATCAAGCAGTACGTTGCAGACCAAGAGAACCCGCCGGCAGACGTCCGTAGCCGTCGTCCGTTGCGCGCCGCCCAGATCA
AGGTGCTGGATGTGGAAGGGGAGCCGGGCTGGTACCAGGTTGCCATGGCCGTGCGCCCGCACTTCAAGTACATGGGGGCG
AGCTTCGAGCTCTCTCTGGTAGGTCGACTGGACAAGGAATAA