Detailed information of component protein


Summary

Component ID T6CP016039
Component protein type TssE
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (144 a.a.); Nucleotide sequence (432 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AMS64_RS11335
Coordinate (Strand) 2475827..2476258 (-)
NCBI ID WP_005299981.1
RefSeq NZ_CP012504
Uniprot ID A0A7Z3YFY5_9GAMM, A0A1E4WSZ6_9GAMM, A0A1E4VY46_9GAMM, A0A3S7DM05_9GAMM, K1JFM2_9GAMM, A0A2R7PZE7_9GAMM, Q0PZH1_AERHY, A0A0T6MNM8_9GAMM, A0A0T6V292_9GAMM
KEGG ID avo:AMS64_11315, aaj:BOQ57_09005
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 8.6e-19 34..122

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-143 MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIREAIRQCIRRYEPRIIHVDVRSPDYQASPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9787 - -



  Protein sequence: 144 a.a.    

>T6CP016039 NZ_CP012504:c2476258-2475827 [Aeromonas veronii] [TssE]
MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIR
EAIRQCIRRYEPRIIHVDVRSPDYQASPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV*

  Nucleotide sequence: 432 bp    

>T6CP016039 NZ_CP012504:c2476258-2475827 [Aeromonas veronii] [TssE]
ATGCCGCATCTCTCTTCCTGGGATAGAGGAAATGCGGCCAGCCTGTTTGATCGCATCCGGGGGGAGGGGCTTGGCTCCTC
CCCTCGTTCGGAAGTTGATGAATTGGTCGACTCTGTCAAACGTCAGCTCGACCAGATCCTCAACACCCGTCCCGGCAATT
GCCGCAGTGCACCCGATTTGGGGGTTATTGATCTCAATGACGCCACTCAGGGCAGTGCGGATATCAAGGGGCGGATCCGG
GAGGCGATCCGGCAATGCATCCGTCGTTATGAACCTCGGATCATCCATGTGGATGTCCGTTCACCCGACTATCAGGCAAG
TCCGCTTGAGATGTCGTTTCAGGTGACGGCCCATGTGCGGCTGGAGCATATCGAGCAAGTTACCTCGTTCAACGTCCATA
TGGACAGTCACCGTCACTACCGCATGGTCTGA