Detailed information of component protein


Summary

Component ID T6CP016038
Component protein type TssF
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (589 a.a.); Nucleotide sequence (1767 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AMS64_RS11330
Coordinate (Strand) 2474057..2475823 (-)
NCBI ID WP_019444948.1
RefSeq NZ_CP012504
Uniprot ID A0A1E4VY90_9GAMM, A0A2S3XMQ5_9GAMM
KEGG ID avo:AMS64_11310
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.5e-153 3..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-588 MSLEHYFRDELAFLRLQGREFADSYPELTRFLSEQNTDPDVERLLEGFAFLTGNLRAKIEDEFPELTHGLLNMLWPNYLRPVPSMTIMQFSVIPGAIAQPALVRQGCQLDSLPIDDVTCHFQTCHDAWVYPAEMRQITAQSGNDLSTISLDIALHAPLPLSELQLDKLRFFLGGDSYTAYELYFWLSNQLSHIELEIDGKRFRQEAKALKSVGFERDDALLPYPNNVYSGYRILQEYFCFPESFLFFELSGGEWPKQPLPVSEFKIHFCFDRPLPAELKIRPDSFMLNCVPAINLFQHDSEPVNLNGRQAEYPLKASYRYADSFEIFSVDQVEGWVEGNMGRSRGTPRIYQPFESFQHQIERAKQRLALYYRVRVRESVSGDGFEHSLSFVRGDETTTVDLDESISVTLTCTNRSRAARLKVGSICVPTGSSPSFATFRNLIRPTRPLRPALDGSLHWTLISNLSLNYVSLLRRDALVQVLRTYDFPALHDKQAEQASRKRLAGIEEIETKPVDRLVRGMPVRGLKSVLSIRQSAFGSEGELYLFSTVLAHFFSLYASVNAFHLLEVVNLDNKERYQWPVQIGQHSLM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -


  Protein sequence: 589 a.a.    

>T6CP016038 NZ_CP012504:c2475823-2474057 [Aeromonas veronii] [TssF]
MSLEHYFRDELAFLRLQGREFADSYPELTRFLSEQNTDPDVERLLEGFAFLTGNLRAKIEDEFPELTHGLLNMLWPNYLR
PVPSMTIMQFSVIPGAIAQPALVRQGCQLDSLPIDDVTCHFQTCHDAWVYPAEMRQITAQSGNDLSTISLDIALHAPLPL
SELQLDKLRFFLGGDSYTAYELYFWLSNQLSHIELEIDGKRFRQEAKALKSVGFERDDALLPYPNNVYSGYRILQEYFCF
PESFLFFELSGGEWPKQPLPVSEFKIHFCFDRPLPAELKIRPDSFMLNCVPAINLFQHDSEPVNLNGRQAEYPLKASYRY
ADSFEIFSVDQVEGWVEGNMGRSRGTPRIYQPFESFQHQIERAKQRLALYYRVRVRESVSGDGFEHSLSFVRGDETTTVD
LDESISVTLTCTNRSRAARLKVGSICVPTGSSPSFATFRNLIRPTRPLRPALDGSLHWTLISNLSLNYVSLLRRDALVQV
LRTYDFPALHDKQAEQASRKRLAGIEEIETKPVDRLVRGMPVRGLKSVLSIRQSAFGSEGELYLFSTVLAHFFSLYASVN
AFHLLEVVNLDNKERYQWPVQIGQHSLM*

  Nucleotide sequence: 1767 bp    

>T6CP016038 NZ_CP012504:c2475823-2474057 [Aeromonas veronii] [TssF]
ATGTCGCTGGAACATTACTTCAGGGATGAGTTGGCTTTTTTGCGCCTGCAAGGGCGCGAATTTGCCGATAGCTATCCCGA
ACTCACCCGCTTTTTGTCGGAGCAGAATACCGACCCGGATGTGGAACGCCTGCTGGAAGGCTTTGCGTTTCTTACGGGCA
ACCTGCGCGCCAAAATCGAGGACGAGTTCCCCGAGCTGACTCACGGTCTGCTCAATATGCTCTGGCCGAACTATCTGCGC
CCCGTCCCCAGCATGACCATCATGCAGTTTTCGGTCATTCCGGGGGCCATTGCCCAACCGGCACTGGTCAGGCAGGGTTG
CCAGCTGGACAGTTTGCCAATCGACGACGTGACCTGCCATTTTCAGACCTGTCACGATGCCTGGGTCTATCCGGCCGAAA
TGCGCCAGATAACGGCGCAAAGTGGCAACGATCTCTCTACTATCTCGCTCGATATTGCGCTGCATGCCCCTCTGCCGCTT
AGCGAATTGCAGCTGGACAAGCTGCGCTTTTTCCTCGGTGGCGACAGCTACACCGCGTATGAGCTCTACTTCTGGCTCTC
CAACCAGCTCTCCCATATCGAGCTGGAGATCGACGGCAAGCGCTTTCGTCAGGAGGCCAAGGCACTCAAATCGGTCGGCT
TCGAGCGCGACGATGCGCTGCTGCCCTATCCGAACAATGTCTATTCCGGCTACCGGATCCTGCAGGAGTATTTCTGCTTT
CCGGAGAGCTTTCTATTCTTCGAACTCTCCGGTGGTGAGTGGCCCAAACAGCCGCTGCCGGTGAGTGAATTCAAAATCCA
TTTCTGTTTCGACCGGCCCTTGCCAGCGGAACTCAAGATCCGCCCTGACTCTTTCATGCTCAACTGCGTGCCGGCCATCA
ACCTGTTCCAGCACGACAGCGAGCCGGTCAATCTCAACGGCCGTCAGGCGGAATACCCGCTCAAGGCGAGCTATCGCTAT
GCCGACAGTTTCGAAATTTTCTCGGTGGATCAGGTTGAAGGCTGGGTTGAGGGCAATATGGGCCGCTCCCGCGGTACGCC
ACGCATCTATCAGCCGTTTGAAAGTTTTCAGCATCAGATTGAGCGGGCCAAACAGCGGCTGGCGCTCTATTACCGGGTGC
GGGTCAGGGAGTCGGTGAGTGGTGATGGCTTCGAGCACAGTCTGTCGTTTGTGCGGGGGGATGAAACCACTACGGTCGAT
CTGGATGAATCCATCTCGGTGACGCTCACCTGCACCAACCGCTCCCGCGCTGCCCGCCTCAAGGTGGGCAGTATCTGCGT
GCCGACCGGCAGTTCACCGTCGTTTGCTACCTTCCGCAACCTGATCCGGCCGACCCGGCCGCTGCGTCCTGCACTGGATG
GCAGCCTGCATTGGACCCTGATTTCCAACCTGTCGCTCAACTATGTCTCTCTGCTGCGCCGGGATGCCCTGGTGCAGGTG
CTGCGTACCTATGACTTTCCCGCTTTGCACGACAAGCAGGCAGAGCAGGCGTCGCGCAAGCGGCTGGCGGGGATCGAGGA
GATCGAGACCAAGCCTGTGGACAGGCTGGTGCGCGGCATGCCGGTGCGGGGGCTCAAGTCGGTGCTCTCCATCCGCCAGT
CCGCCTTTGGCAGCGAAGGGGAGCTCTATCTCTTCAGCACAGTGCTGGCCCATTTCTTCTCGCTCTATGCCAGCGTCAAC
GCTTTCCACCTGCTTGAGGTGGTCAATCTCGATAACAAGGAGCGCTATCAGTGGCCAGTCCAGATCGGTCAGCACTCCCT
GATGTGA