Detailed information of component protein


Summary

Component ID T6CP016037
Component protein type TagH
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (412 a.a.); Nucleotide sequence (1236 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AMS64_RS11320
Coordinate (Strand) 2471820..2473055 (-)
NCBI ID WP_064336281.1
RefSeq NZ_CP012504
Uniprot ID UPI00078C499B
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 9.6e-05 34..101
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-411 VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGSSEQDDWQLRDRLGAVMPAHARVELNDGRFCLCDLSGQTYINGATSPIGRARKVNLEQGDELIVGPFRLRAYLGAISPEQSLQQVLGNRPTEQLDEWLASDPHHTQTLDDPQALAVDPLLALHQERAAPSPLVDARLQAQPQFQPDMDTVSLAPFSAVENTMNQEFLDMPTIENHPDFQPLEGVDHVALTPLMRGLGQPLQLQDTQQAHDMLEEMGKTVRAMVEGLLQLQSDQAALADKHLHPIEDNPLRLGLDYDETLAVMFAEQKSPVHLTAPAAVAESLRNVRIHHVANQQAIGAALDSILQAFSPEALLGRFEQYRRSGAPGMADEGWAWNMYQHYYRELTSARQQGFDKLFHQVYAQAYDQAVRQQQGLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9826 - -


  Protein sequence: 412 a.a.    

>T6CP016037 NZ_CP012504:c2473055-2471820 [Aeromonas veronii] [TagH]
VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGSSEQDDWQLRDRLGAVMPAHARVELNDGRFCLCDLSGQTYINGA
TSPIGRARKVNLEQGDELIVGPFRLRAYLGAISPEQSLQQVLGNRPTEQLDEWLASDPHHTQTLDDPQALAVDPLLALHQ
ERAAPSPLVDARLQAQPQFQPDMDTVSLAPFSAVENTMNQEFLDMPTIENHPDFQPLEGVDHVALTPLMRGLGQPLQLQD
TQQAHDMLEEMGKTVRAMVEGLLQLQSDQAALADKHLHPIEDNPLRLGLDYDETLAVMFAEQKSPVHLTAPAAVAESLRN
VRIHHVANQQAIGAALDSILQAFSPEALLGRFEQYRRSGAPGMADEGWAWNMYQHYYRELTSARQQGFDKLFHQVYAQAY
DQAVRQQQGLI*

  Nucleotide sequence: 1236 bp    

>T6CP016037 NZ_CP012504:c2473055-2471820 [Aeromonas veronii] [TagH]
GTGGACGACTTTAACCAGCAACTATCTCTGGTGGTGCTCAACAGCGAGCAGCTCGACGGCAGCCAGCAGGTGCAATATCG
CTTCGACGAGATGGGGGGAACATTGGGCTCCTCCGAACAGGATGACTGGCAACTGCGAGACAGGTTGGGGGCGGTGATGC
CAGCCCATGCCCGCGTCGAGCTCAATGATGGTCGTTTCTGCCTGTGCGATCTCAGCGGCCAGACCTACATCAATGGTGCC
ACCTCGCCCATCGGGCGGGCTCGCAAGGTCAACCTCGAGCAGGGTGACGAGCTGATTGTCGGCCCTTTTCGCCTGAGAGC
CTATCTCGGTGCCATCTCCCCCGAGCAGAGTTTGCAGCAGGTGCTGGGCAACCGTCCGACCGAGCAGCTTGATGAGTGGC
TGGCAAGCGATCCTCACCACACCCAGACCCTGGATGATCCACAGGCCTTGGCGGTCGACCCTCTGCTGGCATTGCATCAG
GAGCGTGCGGCCCCGAGTCCCTTGGTGGATGCTCGCCTGCAGGCTCAACCGCAGTTTCAACCGGATATGGACACCGTATC
CCTCGCTCCATTTTCAGCCGTCGAGAACACCATGAACCAAGAATTTCTGGATATGCCCACCATCGAGAACCACCCCGATT
TCCAGCCACTGGAGGGCGTTGATCACGTCGCCCTGACCCCGCTGATGCGTGGTCTGGGCCAGCCGTTGCAGCTGCAAGAC
ACCCAGCAAGCTCACGACATGCTCGAAGAGATGGGCAAGACAGTGCGTGCCATGGTGGAGGGGTTGCTGCAACTGCAAAG
CGATCAGGCTGCGCTGGCAGACAAGCACCTGCACCCCATCGAGGACAACCCGCTGCGCCTTGGTCTCGATTATGACGAGA
CCCTGGCGGTGATGTTTGCCGAGCAGAAGAGCCCGGTGCACCTGACCGCGCCTGCTGCGGTAGCCGAGAGTCTGCGCAAT
GTGCGCATTCACCACGTGGCGAACCAGCAGGCTATTGGCGCTGCGCTGGACAGCATCCTGCAAGCCTTCTCGCCCGAGGC
GTTGCTCGGCCGTTTCGAGCAATACCGCCGCAGCGGCGCGCCGGGGATGGCTGATGAAGGGTGGGCCTGGAATATGTACC
AGCACTACTACCGCGAGCTCACCTCTGCCCGCCAGCAGGGGTTCGACAAGCTGTTCCATCAGGTTTACGCCCAGGCGTAT
GACCAGGCCGTGCGTCAGCAACAGGGACTGATTTGA