Detailed information of component protein


Summary

Component ID T6CP016035
Component protein type TssK
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AMS64_RS11310
Coordinate (Strand) 2469968..2471302 (-)
NCBI ID WP_064336279.1
RefSeq NZ_CP012504
Uniprot ID A0A2S3XL10_9GAMM
KEGG ID avo:AMS64_11290
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4.3e-158 19..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MSSRNRVIWREGLFIKPQHFQQQQRHSDYALHARLSALSDYFYGLQSLAINEDYLGFGRIALVGATGILPDGTVFNIPNDDVLPTPLEITDASVANQKVYLALPLSVSGVNEVNQGGQVATRLQAHRHDVRDLHSEGGDVVSLEVGRVSLRLMLEREDRSAYASLAIARILDKRPDGGLVLDPNFMPCSISVSAIPTLKRFLGESAGLVAERARSLSQRIAAPGQQGVADVAEFMMLQLLNRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHDDQQVSFEPVMLALRQALSTVLSPRAVSIQLRKHQYGVMVAMVNESELMQSADFVLAVRARMPQEQLRKQLLQQTKVASSDKIRELISLQLPGIPLLPLPVVPRQLPYHAGYSYFQLDRQSPAWQMLAVSNTLAFHIAGDFPELDMQLWAIRSQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9891 - -


  Protein sequence: 445 a.a.    

>T6CP016035 NZ_CP012504:c2471302-2469968 [Aeromonas veronii] [TssK]
MSSRNRVIWREGLFIKPQHFQQQQRHSDYALHARLSALSDYFYGLQSLAINEDYLGFGRIALVGATGILPDGTVFNIPND
DVLPTPLEITDASVANQKVYLALPLSVSGVNEVNQGGQVATRLQAHRHDVRDLHSEGGDVVSLEVGRVSLRLMLEREDRS
AYASLAIARILDKRPDGGLVLDPNFMPCSISVSAIPTLKRFLGESAGLVAERARSLSQRIAAPGQQGVADVAEFMMLQLL
NRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHDDQQVSFEPVMLALRQALSTVLSPRAVSIQ
LRKHQYGVMVAMVNESELMQSADFVLAVRARMPQEQLRKQLLQQTKVASSDKIRELISLQLPGIPLLPLPVVPRQLPYHA
GYSYFQLDRQSPAWQMLAVSNTLAFHIAGDFPELDMQLWAIRSQ*

  Nucleotide sequence: 1335 bp    

>T6CP016035 NZ_CP012504:c2471302-2469968 [Aeromonas veronii] [TssK]
ATGTCGAGTCGAAATCGGGTTATCTGGCGTGAAGGGCTCTTTATCAAGCCCCAGCACTTCCAGCAACAACAGAGACATTC
AGATTACGCGCTGCACGCGCGTTTGAGCGCGCTGTCCGACTATTTCTACGGGTTGCAGTCGCTTGCCATCAACGAGGATT
ACCTCGGCTTTGGCCGCATCGCCTTGGTGGGGGCCACCGGTATCCTGCCGGACGGCACCGTCTTCAACATCCCGAACGAT
GATGTGCTGCCGACCCCGCTGGAGATCACCGATGCCTCGGTGGCCAACCAGAAGGTCTATCTGGCGCTGCCGCTCTCGGT
GAGCGGGGTCAACGAGGTCAATCAGGGCGGTCAGGTCGCCACCCGTTTGCAGGCCCATCGCCACGACGTGCGGGATCTGC
ACAGCGAAGGGGGGGACGTGGTTTCCCTCGAAGTGGGTCGGGTCAGCTTGCGGTTGATGCTGGAGCGTGAAGATCGCAGC
GCCTATGCGTCCCTCGCCATCGCCCGCATTCTGGACAAACGCCCGGATGGCGGTCTGGTGCTGGATCCCAACTTCATGCC
TTGCAGTATCAGTGTCTCTGCCATTCCGACCCTCAAGCGCTTCCTCGGCGAATCGGCTGGTCTCGTGGCCGAGCGGGCTC
GCAGCCTCTCCCAGCGCATCGCTGCGCCGGGACAGCAGGGGGTGGCCGATGTGGCCGAGTTCATGATGCTGCAACTGCTC
AACCGGGCTCAGCCCCAGCTCTCCCATCTGGCGCGTCTTGGCACCCTGCACCCCGAGCGGTTGCACGAAGCGCTGGTGCA
GCTCTGTGGCGAGTTGATGACCTTTACCGACGAGTCCCGTCTGCCCCCCGAGTTCCCCGCTTATCGTCATGACGATCAGC
AGGTGAGCTTCGAGCCGGTGATGTTGGCCCTGCGTCAGGCGCTCAGTACCGTGCTGTCGCCACGTGCCGTCTCCATCCAG
CTGCGCAAGCACCAGTACGGCGTCATGGTGGCCATGGTCAACGAGAGCGAGTTGATGCAGAGCGCCGACTTCGTGCTGGC
AGTGCGTGCCCGCATGCCGCAGGAGCAGTTGCGCAAACAGTTGCTGCAGCAGACCAAGGTGGCGTCGAGCGACAAGATCC
GCGAACTCATCAGCCTGCAGCTGCCAGGTATCCCGCTGTTGCCGCTGCCGGTGGTGCCGCGCCAGTTGCCCTATCACGCC
GGTTACAGCTACTTCCAGCTCGACCGTCAGAGCCCTGCCTGGCAGATGCTGGCGGTCAGCAACACGCTCGCCTTCCACAT
TGCCGGCGATTTCCCCGAGCTCGACATGCAGCTCTGGGCCATCCGTAGCCAGTGA