Detailed information of component protein


Summary

Component ID T6CP016033
Component protein type TssH
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (881 a.a.); Nucleotide sequence (2643 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AMS64_RS11300
Coordinate (Strand) 2466502..2469144 (-)
NCBI ID WP_064336278.1
RefSeq NZ_CP012504
Uniprot ID A0A2S3XL86_9GAMM
KEGG ID avo:AMS64_11280
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.3e-37 617..778
AAA_lid_9 PF17871.3 2.2e-29 362..452
ClpB_D2-small PF10431.11 7.3e-09 784..857
AAA PF00004.31 2.1e-07 222..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-880 MIRIELPVLVERLNPICRHMLEEAAALCVNHQGAEIRIEHLLLKMLETPLSDVRQILKRAEVEVEELKSLLQPSAADNGYGQGYPSFSPLLVEWLQDSWLLASAELQHGQLRSGVMLLVLLMTPQRYLPGSVTRLLANVNRELLRQQFDEWVKESAETPVTNPANGSTAPAALPTDATLLARFTVNVTEQARQGSLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRIVAGQVPEKLRDVELMTLDLGAMQAGASVKGEFEKRFKGVMQEVKDAVRPVILFIDEAHTLIGAGNQAGGLDVSNLIKPALARGELRTIAATTWGEYKKYVEKDAALSRRFQLVKVGEPNADEATVILRGLRSIYEKAHGVLIDEEALQAAAQLSARYISGRQLPDKAIDVLDTACARVAINLTTPPRAVSHLQNELRQRELEIRQLERQSLIGLGDNDERLIELKAAQQTCRDTLREQEAQWQQQQGLVHRIVELRAALLADQQDEMLAREALDLADAPLDPQAAAEQLAGLERELAELQQGEVLVSAHVDKTQVAAVIAEWTGVPLNRISQGELDVVTRLPEYLGELIKGQDVAVAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIAELMFGGRQYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNVVFFLTSNLGFQTIVDHAEQPDDLLDALYPELAAFFKPALLARMEVIPYLPLGHDTLVQIVGGKLNRLVKLLKERFGADVVLESEVAEEILLRANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPINRVRFSVADHQFVAEVEG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9977 - -


  Protein sequence: 881 a.a.    

>T6CP016033 NZ_CP012504:c2469144-2466502 [Aeromonas veronii] [TssH]
MIRIELPVLVERLNPICRHMLEEAAALCVNHQGAEIRIEHLLLKMLETPLSDVRQILKRAEVEVEELKSLLQPSAADNGY
GQGYPSFSPLLVEWLQDSWLLASAELQHGQLRSGVMLLVLLMTPQRYLPGSVTRLLANVNRELLRQQFDEWVKESAETPV
TNPANGSTAPAALPTDATLLARFTVNVTEQARQGSLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLAL
RIVAGQVPEKLRDVELMTLDLGAMQAGASVKGEFEKRFKGVMQEVKDAVRPVILFIDEAHTLIGAGNQAGGLDVSNLIKP
ALARGELRTIAATTWGEYKKYVEKDAALSRRFQLVKVGEPNADEATVILRGLRSIYEKAHGVLIDEEALQAAAQLSARYI
SGRQLPDKAIDVLDTACARVAINLTTPPRAVSHLQNELRQRELEIRQLERQSLIGLGDNDERLIELKAAQQTCRDTLREQ
EAQWQQQQGLVHRIVELRAALLADQQDEMLAREALDLADAPLDPQAAAEQLAGLERELAELQQGEVLVSAHVDKTQVAAV
IAEWTGVPLNRISQGELDVVTRLPEYLGELIKGQDVAVAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIA
ELMFGGRQYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEL
ADGEGRIIDCKNVVFFLTSNLGFQTIVDHAEQPDDLLDALYPELAAFFKPALLARMEVIPYLPLGHDTLVQIVGGKLNRL
VKLLKERFGADVVLESEVAEEILLRANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPINRVRFSVADHQFVAEVEG
*

  Nucleotide sequence: 2643 bp    

>T6CP016033 NZ_CP012504:c2469144-2466502 [Aeromonas veronii] [TssH]
TTGATTCGTATAGAGCTACCGGTACTGGTGGAAAGACTCAACCCCATCTGCCGTCACATGCTGGAGGAGGCTGCGGCCCT
CTGTGTCAATCATCAGGGCGCCGAGATCCGCATCGAGCACCTGCTGCTCAAGATGCTGGAGACCCCCCTCAGCGATGTGC
GTCAGATCCTCAAACGGGCCGAAGTTGAGGTTGAAGAGTTAAAGAGCCTGCTGCAACCCTCGGCGGCCGATAACGGTTAT
GGTCAGGGTTATCCCTCCTTCTCGCCGCTATTGGTGGAGTGGCTGCAAGACAGCTGGCTGCTCGCCTCTGCCGAGCTGCA
ACATGGCCAACTGCGCAGCGGCGTCATGCTGCTTGTGCTGCTGATGACTCCCCAGCGTTACCTGCCGGGCTCGGTGACCC
GTTTGCTTGCCAACGTCAATCGCGAGCTGCTGCGCCAGCAGTTCGACGAGTGGGTCAAGGAGTCTGCCGAGACGCCGGTG
ACCAATCCGGCCAATGGCAGCACGGCACCGGCAGCACTGCCGACCGACGCCACTCTGCTGGCCCGCTTTACCGTCAATGT
GACCGAGCAGGCCCGTCAGGGTTCGCTTGATCCCGTACTCTGCCGGGATCACGAGATCGATCTGATGATCGACATCCTCT
CCCGTCGCCGCAAAAACAACCCCATCGTGGTGGGGGAGGCGGGTGTCGGTAAAAGTGCCCTGATCGAAGGGTTGGCGCTG
CGCATCGTCGCAGGCCAGGTGCCGGAAAAATTGCGCGATGTGGAGCTGATGACCCTGGATCTTGGCGCCATGCAGGCTGG
TGCCTCGGTCAAGGGGGAGTTCGAGAAGCGTTTCAAGGGGGTGATGCAGGAGGTCAAGGACGCCGTGCGACCTGTCATCC
TCTTTATCGATGAAGCCCACACCCTGATCGGGGCGGGCAATCAGGCGGGTGGGCTGGATGTCTCCAACCTCATCAAGCCT
GCGCTGGCCCGTGGCGAGCTGCGCACCATCGCCGCCACCACCTGGGGCGAGTACAAGAAGTACGTGGAAAAAGATGCCGC
CCTGTCGCGCCGTTTCCAGCTGGTGAAAGTGGGTGAGCCCAATGCCGATGAGGCTACGGTGATCCTGCGCGGCCTGCGCA
GCATCTACGAAAAGGCCCACGGGGTGCTGATCGATGAGGAAGCGCTGCAAGCCGCCGCCCAGCTCTCCGCCCGTTACATC
TCCGGTCGTCAACTGCCGGACAAGGCGATCGACGTGCTCGATACCGCCTGTGCCCGGGTGGCCATCAACCTCACCACGCC
GCCGCGCGCGGTCAGCCATTTGCAAAACGAACTGCGCCAGCGTGAGCTGGAGATCCGTCAGCTGGAACGCCAGAGCCTGA
TCGGTCTGGGTGACAACGATGAGCGACTCATAGAACTGAAAGCGGCCCAGCAGACCTGCCGTGACACCCTGCGTGAGCAG
GAAGCCCAGTGGCAGCAACAGCAGGGATTGGTGCATCGGATTGTCGAGCTGCGTGCCGCCCTGCTGGCCGATCAGCAGGA
TGAGATGCTGGCCAGAGAAGCGCTGGATCTGGCCGATGCGCCGCTCGATCCGCAAGCGGCTGCCGAGCAACTGGCCGGGC
TCGAGCGCGAGCTGGCCGAGCTGCAACAGGGTGAGGTGCTGGTTTCCGCCCATGTCGACAAGACTCAGGTCGCAGCGGTG
ATCGCCGAGTGGACCGGGGTGCCGCTTAATCGCATCTCCCAAGGGGAGCTCGATGTGGTGACCCGTCTGCCGGAGTACCT
TGGCGAGCTCATCAAGGGGCAGGATGTGGCGGTGGCCCATCTGCACAAACACCTGCTGACCGCACGCGCCGATTTGCGTC
GTCCAGGCCGTCCGCTGGGTGCCTTCCTGCTGGTGGGGCCAAGCGGGGTCGGCAAGACCGAAACCGTATTGCAGATTGCC
GAGCTGATGTTTGGCGGTCGCCAGTATCTGACCACCATCAACATGTCCGAGTATCAGGAGAAGCACACAGTCTCCCGTCT
GATCGGTTCGCCTCCCGGCTATGTCGGCTTTGGCGAGGGGGGCGTGCTGACCGAAGCCATTCGCCAGAAACCCTACTCGG
TGGTGCTGCTGGATGAGGTGGAAAAAGCCCATCCTGACGTGCTCAACCTCTTCTATCAGGCGTTCGACAAGGGCGAGCTG
GCCGATGGGGAAGGGCGGATCATCGACTGCAAGAACGTGGTCTTCTTCCTCACCTCCAACCTTGGTTTCCAGACCATCGT
TGATCATGCCGAGCAGCCTGATGACCTGCTGGATGCGCTCTACCCTGAGCTGGCCGCCTTCTTCAAGCCGGCCCTGCTGG
CGCGGATGGAGGTGATCCCCTACCTGCCGCTCGGTCACGACACCTTGGTGCAGATCGTCGGTGGCAAACTCAACCGGCTG
GTCAAGCTGCTCAAGGAGCGTTTTGGTGCCGATGTGGTGCTGGAGAGCGAGGTGGCCGAGGAGATCCTGCTGCGGGCCAA
CCGCAGCGAGAACGGCGCGCGGATGCTGGAGTCCGTCATCGACGGTGCCCTGCTGCCGCCGGTTTCCCTGCAACTGTTGC
AGCGCCTCTCGGCCGGTGAGCCCATCAACCGGGTACGCTTCTCGGTGGCCGATCACCAGTTTGTGGCCGAGGTGGAGGGC
TGA