Detailed information of component protein


Summary

Component ID T6CP016031
Component protein type TssM
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (1166 a.a.); Nucleotide sequence (3498 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AMS64_RS11280
Coordinate (Strand) 2459381..2462878 (-)
NCBI ID WP_064336275.1
RefSeq NZ_CP012504
Uniprot ID UPI00078D3148
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 2.3e-73 506..819
IcmF-related_N PF14331.8 8.9e-73 201..454
IcmF_C PF06744.14 4.6e-22 1038..1145
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-19 MFKTIFTFLRQQLPKLKPS
Transmembrane helix 20-39 WPLLGVVLWVVALILVWWLG
Outside 40-53 PRIEIRDAKPFEPL
Transmembrane helix 54-76 WGRVVFTLLWLWLLLGVLSWRVW
Inside 77-449 RKMKQLKAERQHEVLLEQDPVKGLIDKQAQFLNRWLQALNEHLGKGALYAMPWYLVLGLPGSGKSSLIHRANPANKLNPRLDTELRDVAQGQLVDCWLGEQAVMLDPAGALLSQAEPELDPQARKHERLWLHLLNWLNEHRRRQPLNGLVLTVDLAWLSAASVAERKAYAQLMRARLQEVSATMNTRLPLYVTFTKLDMLRGFDVVYEQLDKEARDAVLGVTFNPGSSQGKSWQQDLALFWDQWVDNLNRNLPEMMLARLDAAQRNALFSFVRQLAGLKDYVTSLLDETLTIEESKPLLVRGVYISSVYQQGVPFDAFAQAASRRYSLPEPIHSALRGESNTYFVRKLFSSIIFPEAHLAGENRLHTLYRRRR
Transmembrane helix 450-472 MAIGLSCLSLFSAALIGGWHYFY
Outside 473-1165 RVNEEAGRNVLTKAQAFTETNEVADEHAFGVSQLPRLNLIREATLSFGNYRERMPLVADLGLYQGDEIGPYVEGSYLQLLGLRFLPAQMQGLLEDLNRAPAGSEEKLSILRVMRMLDDASGRNKELVEQYMASRWQKAFPGQGAVQEQLMGHLDYALDHTDWHGARAARDQAAITAFVPFKEPVYGAQRELGKLPMYQRVYQNLVVKAGDVLPPDLNVRDEVGPTFDTVFALRNESAGQVPRLLTWPGFSDFFLKQDKALIDLTAMDAWVLGQRKLSQLSEADRKEITRQVNDRYVTDYVNQWQKLLTNLDVQTLASPEQALDVLSAITGNDQPFQRVLAALDDNTRIRKISDAEGDPAQAITARIGRPFMATNGVLTGRGEQGPLISEVNQKLIELQHYMELIVNATEPGQSALKAVQLRLTNKYADPVFALQQYARGLPEPLNRWVGQLADQSSQLVIDLAMSSLNQEWQAKVLAPFNSQLADRYPFNPSSAKDVPLSEMERFFAPGGTLDSFYQVNLKPMVEGGLMEGELSSPIQAELIKQLDRAARIRQIFFSQQGNLEVQFALEPIELTANKRRSVLNLDGQLLEYAHGRRNKIPLVWPNTMRDGAESKITLVPAARERSPRSEGFVGPWAMFRLMDKGELTQVNEATFDVRFPVDQGAMTYRVYTDSAQNPFTGGLFSQFSLPESLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9962 - -


  Protein sequence: 1166 a.a.    

>T6CP016031 NZ_CP012504:c2462878-2459381 [Aeromonas veronii] [TssM]
MFKTIFTFLRQQLPKLKPSWPLLGVVLWVVALILVWWLGPRIEIRDAKPFEPLWGRVVFTLLWLWLLLGVLSWRVWRKMK
QLKAERQHEVLLEQDPVKGLIDKQAQFLNRWLQALNEHLGKGALYAMPWYLVLGLPGSGKSSLIHRANPANKLNPRLDTE
LRDVAQGQLVDCWLGEQAVMLDPAGALLSQAEPELDPQARKHERLWLHLLNWLNEHRRRQPLNGLVLTVDLAWLSAASVA
ERKAYAQLMRARLQEVSATMNTRLPLYVTFTKLDMLRGFDVVYEQLDKEARDAVLGVTFNPGSSQGKSWQQDLALFWDQW
VDNLNRNLPEMMLARLDAAQRNALFSFVRQLAGLKDYVTSLLDETLTIEESKPLLVRGVYISSVYQQGVPFDAFAQAASR
RYSLPEPIHSALRGESNTYFVRKLFSSIIFPEAHLAGENRLHTLYRRRRMAIGLSCLSLFSAALIGGWHYFYRVNEEAGR
NVLTKAQAFTETNEVADEHAFGVSQLPRLNLIREATLSFGNYRERMPLVADLGLYQGDEIGPYVEGSYLQLLGLRFLPAQ
MQGLLEDLNRAPAGSEEKLSILRVMRMLDDASGRNKELVEQYMASRWQKAFPGQGAVQEQLMGHLDYALDHTDWHGARAA
RDQAAITAFVPFKEPVYGAQRELGKLPMYQRVYQNLVVKAGDVLPPDLNVRDEVGPTFDTVFALRNESAGQVPRLLTWPG
FSDFFLKQDKALIDLTAMDAWVLGQRKLSQLSEADRKEITRQVNDRYVTDYVNQWQKLLTNLDVQTLASPEQALDVLSAI
TGNDQPFQRVLAALDDNTRIRKISDAEGDPAQAITARIGRPFMATNGVLTGRGEQGPLISEVNQKLIELQHYMELIVNAT
EPGQSALKAVQLRLTNKYADPVFALQQYARGLPEPLNRWVGQLADQSSQLVIDLAMSSLNQEWQAKVLAPFNSQLADRYP
FNPSSAKDVPLSEMERFFAPGGTLDSFYQVNLKPMVEGGLMEGELSSPIQAELIKQLDRAARIRQIFFSQQGNLEVQFAL
EPIELTANKRRSVLNLDGQLLEYAHGRRNKIPLVWPNTMRDGAESKITLVPAARERSPRSEGFVGPWAMFRLMDKGELTQ
VNEATFDVRFPVDQGAMTYRVYTDSAQNPFTGGLFSQFSLPESLY*

  Nucleotide sequence: 3498 bp    

>T6CP016031 NZ_CP012504:c2462878-2459381 [Aeromonas veronii] [TssM]
ATGTTCAAAACCATCTTTACCTTTCTGCGGCAACAGCTGCCGAAACTGAAACCCTCCTGGCCCCTGCTCGGTGTGGTGCT
GTGGGTTGTCGCCCTGATCCTGGTGTGGTGGCTGGGGCCTCGCATCGAGATCCGTGATGCCAAGCCATTCGAGCCCTTGT
GGGGGCGGGTGGTGTTTACCCTGCTCTGGCTCTGGTTGCTGCTGGGGGTACTCTCCTGGCGGGTATGGCGCAAGATGAAG
CAGCTCAAGGCCGAGCGCCAGCATGAGGTGCTGCTGGAACAAGATCCGGTCAAAGGGCTCATCGACAAACAGGCGCAGTT
CCTCAATCGTTGGTTGCAAGCCTTGAATGAACACCTTGGCAAGGGGGCGCTCTACGCCATGCCCTGGTATCTGGTGCTGG
GTCTGCCCGGCAGCGGCAAGAGCAGCCTGATCCACCGTGCCAATCCGGCCAACAAGCTCAATCCCAGACTCGATACCGAA
CTGCGGGACGTGGCGCAAGGCCAGCTGGTCGATTGCTGGCTGGGGGAGCAAGCCGTGATGCTGGATCCGGCCGGCGCGCT
GTTGTCACAAGCCGAGCCCGAGCTGGATCCGCAAGCTCGCAAGCATGAGCGGCTCTGGTTGCATCTGCTGAACTGGCTCA
ACGAGCACCGTCGTCGTCAGCCCCTTAATGGTCTGGTACTGACCGTTGATTTGGCATGGCTGTCCGCGGCCAGCGTGGCC
GAGCGCAAGGCGTATGCCCAGCTGATGCGTGCCCGGTTGCAAGAGGTGTCGGCCACCATGAATACCCGGCTGCCACTCTA
TGTCACCTTCACCAAACTCGATATGCTGCGCGGCTTTGATGTGGTCTATGAGCAGTTGGATAAAGAGGCCCGTGACGCCG
TGCTGGGGGTGACCTTCAACCCCGGCAGCAGTCAGGGCAAATCCTGGCAGCAGGATCTGGCGCTGTTCTGGGATCAGTGG
GTCGACAATCTCAACCGCAATCTGCCGGAGATGATGCTGGCCCGGCTCGATGCCGCCCAGCGCAACGCCCTCTTCTCGTT
TGTTCGTCAATTGGCGGGTCTCAAGGATTATGTGACCAGCCTGCTCGATGAAACCCTGACCATTGAAGAGAGCAAACCAC
TGCTGGTGCGCGGCGTCTATATCAGCTCCGTCTATCAGCAAGGTGTCCCGTTCGATGCCTTTGCTCAGGCCGCTTCCCGG
CGTTACAGCTTGCCCGAGCCGATTCACTCAGCCCTGCGCGGGGAGTCCAACACCTATTTTGTGCGCAAGTTGTTCTCTTC
GATCATCTTCCCCGAGGCCCATCTGGCCGGAGAAAATCGGCTGCATACCCTCTATCGTCGTCGCCGGATGGCCATTGGCT
TGAGTTGCTTGTCGCTCTTCTCTGCAGCCCTGATCGGTGGCTGGCACTACTTCTACCGGGTCAATGAGGAGGCGGGGCGC
AATGTACTGACCAAGGCGCAAGCGTTCACCGAGACTAACGAGGTCGCTGATGAACATGCCTTCGGTGTCAGCCAGTTGCC
ACGTCTCAACCTTATTCGCGAGGCAACCCTCTCTTTTGGCAACTATCGCGAGCGGATGCCGCTGGTGGCAGACCTTGGCC
TCTATCAGGGGGACGAGATTGGCCCCTATGTGGAAGGCTCCTATCTGCAACTGCTGGGGCTGCGTTTCCTGCCTGCCCAG
ATGCAGGGACTGCTGGAGGATCTTAACCGGGCACCGGCTGGCAGCGAAGAGAAGCTCTCCATCCTGCGGGTGATGCGGAT
GCTCGATGATGCCTCAGGTCGCAACAAGGAGCTGGTGGAGCAGTACATGGCCAGCCGCTGGCAGAAAGCGTTCCCGGGAC
AGGGGGCGGTCCAGGAGCAGTTGATGGGACATCTTGACTATGCCCTTGATCATACCGACTGGCATGGTGCTCGCGCCGCT
CGGGATCAGGCTGCCATCACGGCATTTGTGCCGTTCAAGGAGCCGGTGTATGGCGCCCAGCGTGAACTGGGCAAATTGCC
CATGTATCAGCGGGTCTATCAGAATCTGGTGGTGAAGGCGGGTGATGTGTTGCCGCCGGATCTCAATGTCCGTGACGAGG
TGGGCCCCACCTTCGATACCGTGTTTGCCCTGCGCAACGAGAGTGCTGGTCAGGTGCCGCGTTTGCTGACCTGGCCCGGG
TTCAGTGATTTCTTCCTCAAACAGGACAAGGCGCTGATCGATCTCACCGCCATGGATGCCTGGGTGCTGGGCCAGCGCAA
GCTGAGCCAGTTGAGCGAGGCGGATCGCAAGGAGATCACCCGTCAGGTCAACGATCGCTATGTCACCGATTACGTCAACC
AGTGGCAAAAATTGCTGACCAATCTGGATGTGCAGACCCTTGCCAGTCCCGAGCAGGCGCTCGATGTGCTCTCGGCCATC
ACCGGCAACGACCAGCCATTCCAGCGGGTGCTCGCTGCGCTGGATGACAATACCCGTATTCGCAAGATCTCCGATGCGGA
AGGAGATCCGGCGCAGGCGATCACTGCCCGGATCGGTCGCCCCTTTATGGCCACCAATGGCGTCTTGACTGGCCGTGGGG
AACAGGGGCCGCTGATTTCGGAAGTGAACCAGAAGCTGATTGAGCTGCAGCACTATATGGAGCTGATCGTCAATGCCACC
GAGCCGGGACAGTCAGCCCTCAAGGCGGTGCAACTGCGTTTGACCAACAAGTACGCCGATCCGGTCTTTGCATTGCAGCA
ATATGCTCGTGGTCTGCCCGAGCCGCTCAATCGCTGGGTGGGTCAACTGGCGGATCAGAGTTCGCAACTGGTGATTGATC
TGGCGATGTCATCCCTCAATCAGGAGTGGCAGGCGAAGGTGCTGGCACCGTTCAACAGCCAACTGGCGGATCGCTATCCG
TTCAACCCGAGCTCTGCCAAGGATGTGCCGCTCTCCGAGATGGAGCGCTTCTTTGCGCCGGGCGGCACCCTGGACAGCTT
CTATCAGGTCAACCTCAAACCCATGGTGGAGGGGGGCTTGATGGAGGGAGAGCTGAGCTCACCCATTCAGGCCGAGCTTA
TCAAACAGCTGGATCGCGCTGCGCGGATCCGCCAGATCTTCTTCAGCCAGCAGGGCAATCTGGAGGTGCAATTTGCCCTC
GAGCCCATCGAACTCACCGCCAACAAGCGGCGTAGTGTGCTCAACCTGGATGGCCAGTTGCTGGAGTATGCCCACGGCCG
TCGCAACAAGATCCCGCTGGTGTGGCCAAACACCATGCGCGACGGGGCCGAAAGCAAGATCACCCTGGTACCGGCGGCCC
GCGAACGTTCACCGCGCAGCGAGGGCTTTGTCGGTCCCTGGGCCATGTTCCGCCTGATGGACAAGGGGGAGCTGACTCAG
GTCAACGAGGCCACCTTTGATGTGCGCTTCCCGGTGGATCAGGGTGCCATGACCTATCGGGTCTATACCGACAGCGCCCA
GAACCCCTTCACCGGCGGCCTGTTCAGCCAGTTCAGCTTGCCTGAATCCCTCTATTGA