Detailed information of component protein


Summary

Component ID T6CP016031
Component protein type TssM
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (1166 a.a.); Nucleotide sequence (3498 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 2459381..2462878 (-)
NCBI ID WP_064336275.1
RefSeq NZ_CP012504
Uniprot ID UPI00078D3148
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-19 MFKTIFTFLRQQLPKLKPS
Transmembrane helix 20-39 WPLLGVVLWVVALILVWWLG
Outside 40-53 PRIEIRDAKPFEPL
Transmembrane helix 54-76 WGRVVFTLLWLWLLLGVLSWRVW
Inside 77-449 RKMKQLKAERQHEVLLEQDPVKGLIDKQAQFLNRWLQALNEHLGKGALYAMPWYLVLGLPGSGKSSLIHRANPANKLNPRLDTELRDVAQGQLVDCWLGEQAVMLDPAGALLSQAEPELDPQARKHERLWLHLLNWLNEHRRRQPLNGLVLTVDLAWLSAASVAERKAYAQLMRARLQEVSATMNTRLPLYVTFTKLDMLRGFDVVYEQLDKEARDAVLGVTFNPGSSQGKSWQQDLALFWDQWVDNLNRNLPEMMLARLDAAQRNALFSFVRQLAGLKDYVTSLLDETLTIEESKPLLVRGVYISSVYQQGVPFDAFAQAASRRYSLPEPIHSALRGESNTYFVRKLFSSIIFPEAHLAGENRLHTLYRRRR
Transmembrane helix 450-472 MAIGLSCLSLFSAALIGGWHYFY
Outside 473-1165 RVNEEAGRNVLTKAQAFTETNEVADEHAFGVSQLPRLNLIREATLSFGNYRERMPLVADLGLYQGDEIGPYVEGSYLQLLGLRFLPAQMQGLLEDLNRAPAGSEEKLSILRVMRMLDDASGRNKELVEQYMASRWQKAFPGQGAVQEQLMGHLDYALDHTDWHGARAARDQAAITAFVPFKEPVYGAQRELGKLPMYQRVYQNLVVKAGDVLPPDLNVRDEVGPTFDTVFALRNESAGQVPRLLTWPGFSDFFLKQDKALIDLTAMDAWVLGQRKLSQLSEADRKEITRQVNDRYVTDYVNQWQKLLTNLDVQTLASPEQALDVLSAITGNDQPFQRVLAALDDNTRIRKISDAEGDPAQAITARIGRPFMATNGVLTGRGEQGPLISEVNQKLIELQHYMELIVNATEPGQSALKAVQLRLTNKYADPVFALQQYARGLPEPLNRWVGQLADQSSQLVIDLAMSSLNQEWQAKVLAPFNSQLADRYPFNPSSAKDVPLSEMERFFAPGGTLDSFYQVNLKPMVEGGLMEGELSSPIQAELIKQLDRAARIRQIFFSQQGNLEVQFALEPIELTANKRRSVLNLDGQLLEYAHGRRNKIPLVWPNTMRDGAESKITLVPAARERSPRSEGFVGPWAMFRLMDKGELTQVNEATFDVRFPVDQGAMTYRVYTDSAQNPFTGGLFSQFSLPESLY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9962 - -


  Protein sequence: 1166 a.a.    


  Nucleotide sequence: 3498 bp