Detailed information of component protein


Summary

Component ID T6CP016030
Component protein type TssA
T6SS ID (Type) T6SS01208 experimental (Type i1)
Strain Aeromonas veronii strain TH0426
Replicon chromosome
Sequence Protein sequence (476 a.a.); Nucleotide sequence (1428 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AMS64_RS11275
Coordinate (Strand) 2457910..2459337 (-)
NCBI ID WP_064336274.1
RefSeq NZ_CP012504
Uniprot ID A0A2S3XMP5_9GAMM
KEGG ID avo:AMS64_11255
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 1.5e-52 323..469
ImpA_N PF06812.14 9.3e-23 10..115
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-248 MSQNQQGQQALKVGRDPRMLPEYEALRAEINKLSHASRPEVDWVRIHQLASQIFEKHGVDLQTAIYFTLARSRIQGLSGFTEGCEFLANLIVTQWESFWPPVHQERARIEMLDWFIARISDVIRQYQISHEDKRLIYRCERALQLISEKLHNAGLSRIPRVENLVHFIEGYTHLFDETEIVIVSDEPGLKDELQIPPMVFFKSDMESDHGASVGATPHLPQGSILVGREKGQMKPTVLKIEQHRKQRP
Transmembrane helix 249-271 AWFWFACGLLTCALPMMGWLGWQ
Outside 272-475 HQQQEKVIAAQRLQQPAAALPQALSYDDIRQARIVLGEQTLQGMESELVSRYQAQLDRLEQTSPLYWYRYGEGLRNSLQMLYPDSLAVKALDKQWQTALAGQQGDLNRVPTYLEARAGVDALIDQLLELERQRKTVTISYLKSQLYEVQKNLMQEVPFSLRLSELEARKASQEPITAAELKGIESDLKALNIRLYQLQQGLSGS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -


  Protein sequence: 476 a.a.    

>T6CP016030 NZ_CP012504:c2459337-2457910 [Aeromonas veronii] [TssA]
MSQNQQGQQALKVGRDPRMLPEYEALRAEINKLSHASRPEVDWVRIHQLASQIFEKHGVDLQTAIYFTLARSRIQGLSGF
TEGCEFLANLIVTQWESFWPPVHQERARIEMLDWFIARISDVIRQYQISHEDKRLIYRCERALQLISEKLHNAGLSRIPR
VENLVHFIEGYTHLFDETEIVIVSDEPGLKDELQIPPMVFFKSDMESDHGASVGATPHLPQGSILVGREKGQMKPTVLKI
EQHRKQRPAWFWFACGLLTCALPMMGWLGWQHQQQEKVIAAQRLQQPAAALPQALSYDDIRQARIVLGEQTLQGMESELV
SRYQAQLDRLEQTSPLYWYRYGEGLRNSLQMLYPDSLAVKALDKQWQTALAGQQGDLNRVPTYLEARAGVDALIDQLLEL
ERQRKTVTISYLKSQLYEVQKNLMQEVPFSLRLSELEARKASQEPITAAELKGIESDLKALNIRLYQLQQGLSGS*

  Nucleotide sequence: 1428 bp    

>T6CP016030 NZ_CP012504:c2459337-2457910 [Aeromonas veronii] [TssA]
ATGTCACAGAATCAACAAGGCCAGCAGGCATTGAAAGTGGGGCGTGACCCCAGAATGTTGCCGGAGTACGAGGCGCTGCG
CGCCGAGATCAACAAGCTTAGCCACGCCTCCCGCCCCGAGGTGGATTGGGTCAGGATCCATCAGCTTGCCAGTCAAATCT
TTGAAAAGCACGGGGTGGATCTGCAAACTGCCATCTACTTCACTCTGGCGCGCTCCCGCATTCAGGGGCTGAGCGGCTTT
ACCGAAGGGTGCGAGTTTCTCGCCAACCTCATCGTCACCCAGTGGGAGAGTTTCTGGCCACCGGTGCATCAGGAGCGGGC
CCGCATCGAGATGCTCGACTGGTTTATCGCCCGCATCAGCGACGTGATCCGCCAGTACCAGATCAGCCACGAGGACAAGC
GGTTGATCTACCGCTGCGAGCGGGCGCTGCAACTCATCAGCGAGAAGCTGCACAACGCCGGTTTGAGCCGCATCCCCCGG
GTCGAGAATCTGGTGCACTTTATCGAGGGGTACACCCATCTGTTTGACGAGACCGAGATTGTCATCGTCTCCGATGAGCC
GGGCCTCAAGGATGAGCTGCAGATCCCGCCGATGGTCTTCTTCAAATCCGACATGGAGAGCGACCACGGCGCCTCTGTCG
GGGCAACCCCGCACCTGCCTCAGGGCAGTATCCTGGTGGGGCGTGAGAAGGGGCAGATGAAGCCAACCGTGCTCAAGATT
GAGCAGCACCGCAAACAGCGGCCGGCCTGGTTCTGGTTTGCCTGTGGCCTGCTCACCTGCGCCTTGCCCATGATGGGATG
GCTTGGCTGGCAACATCAGCAGCAGGAGAAGGTCATCGCGGCGCAACGGTTGCAACAACCCGCTGCAGCGTTGCCGCAGG
CCCTGAGTTATGACGATATTCGGCAGGCGCGCATCGTGTTGGGGGAGCAGACCCTGCAGGGGATGGAGAGCGAGCTGGTG
TCGCGTTATCAGGCCCAACTGGATCGGCTGGAGCAGACCTCGCCCCTCTACTGGTACCGTTATGGCGAGGGGCTGCGCAA
TTCGCTGCAGATGCTCTATCCCGACTCGCTGGCGGTCAAGGCCCTCGACAAACAGTGGCAGACCGCGCTGGCCGGCCAGC
AGGGGGATCTCAACCGGGTGCCGACCTATCTGGAGGCGCGCGCCGGGGTCGATGCCCTGATCGATCAGCTGCTGGAGCTG
GAGCGTCAGCGCAAGACAGTCACGATTTCCTACCTCAAGTCTCAGCTCTACGAGGTACAGAAGAACCTGATGCAGGAGGT
CCCGTTCAGCTTGCGCCTGAGCGAACTGGAGGCGCGAAAAGCGTCGCAGGAACCTATTACGGCTGCCGAGCTGAAAGGGA
TAGAGAGTGACTTGAAAGCACTCAACATCCGGCTTTACCAACTGCAACAGGGACTATCCGGTAGCTGA