Detailed information of component protein


Summary

Component ID T6CP016023
Component protein type TssD
T6SS ID (Type) T6SS01291 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BWP10_RS08190
Coordinate (Strand) 22744..23229 (+)
NCBI ID 446234947
RefSeq NZ_MTFW01000011
Uniprot ID A0A2T8L445_SALET, A0A0H3N9H6_SALTS, F5CQ80_SALER, A0A2T9Q939_SALET, A0A2T8QQ42_SALET, A0A0H3BMP9_SALNS, A0A2R4DDD4_SALET, A0A0F6AX78_SALT1, A0A2T8XXQ6_SALIN, A0A265BA06_SALET, A0A1S0ZM11_SALET, Q93IS5_SALTI, H9L4J2_SALTM, E8XIU1_SALT4, Q7CR58_SALTY
KEGG ID seo:STM14_0324, stm:STM0276, stt:t2584, seni:CY43_01380, sty:STY0302, see:SNSL254_A0302, sey:SL1344_0271, seb:STM474_0288
PDB ID 5XHH

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.9e-38 6..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9900 - -



  Protein sequence: 162 a.a.    

>T6CP016023 NZ_MTFW01000011:22744-23229 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*

  Nucleotide sequence: 486 bp    

>T6CP016023 NZ_MTFW01000011:22744-23229 [Salmonella enterica subsp. enterica serovar Typhimurium] [TssD]
ATGGCTTATGACATTTTTTTGAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CCAACCTGGATTTTGATCACTATATCGACCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACGATGGTGAAATCGCCTCCCGTGAAACGGTGGAGCTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA