Detailed information of component protein


Summary

Component ID T6CP016015
Component protein type TssI
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (1038 a.a.); Nucleotide sequence (3114 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BL246_RS06000
Coordinate (Strand) 95264..98377 (+)
NCBI ID 1133529386
RefSeq NZ_MOLM01000011
Uniprot ID A0A023PRJ8_VIBCL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2e-70 41..334
Phage_base_V PF04717.14 5.1e-15 391..458
PG_binding_1 PF01471.20 4.5e-08 731..773
Pesticin PF16754.7 9.3e-06 842..991
DUF2345 PF10106.11 8e-05 570..618
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-1037 MARLQFQLKVDGLEDESLVVRGFEGQESLSDSVWRSEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQINGIVRQFSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETDLQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKKPAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDLAMNRDWLVVQANHQGTQPQALQEEGGAGATTYSNQLKLIPAHITWRARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHFPWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTETHQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHEVGASLQHKVGQHIAVEAGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAAAPRMLAQAKPVAELVQPDIAASMQSGAARVIDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPSYSIGPVDGIVGNGTLLALDEALMDGWVYENDEMDLKWLTVPKGQLTFDAEGNDVDSSTFFSRKVHVPNMRGSVIGNSGVTIGRGLDLGNPPSAASGQTPSKINLKELFELANLNPKLSKWLLSVEGKTKDSALESLKNSGLSDEELTITRKQQYIMFNHVYDYLEEKTRVLITKPDVKAAYGSVDWDGMPRNVKDVLVDITYRGDSYSKTRAWYVPTLVNDRNSVDYSNFKKSLDYKNSIWDKVPLSRKRVRYEHL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 1038 a.a.    

>T6CP016015 NZ_MOLM01000011:95264-98377 [Vibrio cholerae] [TssI]
MARLQFQLKVDGLEDESLVVRGFEGQESLSDSVWRSEPCYGFRYQVDLASALSNLTAEQFVDQTAHLTILRDGQVVQQIN
GIVRQFSKGDTGHRHTFYSLTLVPALERLSLRSNSRIFQQQSVPEIISILLQEMGIEDYAFALKRECAQREFCVQYRETD
LQFLHRIAAEEGLVYSHLHEAQKHTLLFTDSSDSQPKLAKPVPYNALAGGEINLPYVVDLQFKTTAQVSHTELKDYSFKK
PAYGFTQRTQGKDIAYQQPNYEHFDAPGRYKDDANGKAFSQIRLEYLRRDALLADAKSDEPLLLAGVRFDLQDHLDLAMN
RDWLVVQANHQGTQPQALQEEGGAGATTYSNQLKLIPAHITWRARPCAKPQVDGPMIATVVGPQGEEIYCDNFGRVKVHF
PWDRYSSSNEKSSCWVRVAQEWAGSQYGSMAIPRVGHEVIVSFLNGDPDQPIITGRTYHATNTAPYALPDHKTKTVLRTE
THQGQGYNELSFEDQAGSEQILLHAQKDWDALIEHDHTEVIRHDQHLTVDNDRFTRIQRNQHLTVEGEVRSKIALDSSHE
VGASLQHKVGQHIAVEAGKEISLKSGAKIVVEAGAELTLKAGGSFVKVDAGGVHLVGPAINLNAGGSAGSGSAYGGQLAA
APRMLAQAKPVAELVQPDIAASMQSGAARVIDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKR
QASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPSYSIGPVDGIVGNGTLLALD
EALMDGWVYENDEMDLKWLTVPKGQLTFDAEGNDVDSSTFFSRKVHVPNMRGSVIGNSGVTIGRGLDLGNPPSAASGQTP
SKINLKELFELANLNPKLSKWLLSVEGKTKDSALESLKNSGLSDEELTITRKQQYIMFNHVYDYLEEKTRVLITKPDVKA
AYGSVDWDGMPRNVKDVLVDITYRGDSYSKTRAWYVPTLVNDRNSVDYSNFKKSLDYKNSIWDKVPLSRKRVRYEHL*

  Nucleotide sequence: 3114 bp    

>T6CP016015 NZ_MOLM01000011:95264-98377 [Vibrio cholerae] [TssI]
ATGGCAAGGTTACAGTTTCAATTAAAGGTGGATGGCCTTGAGGATGAATCCCTCGTCGTACGCGGATTTGAAGGGCAAGA
GTCCTTGTCTGATTCTGTATGGCGCAGTGAACCCTGCTATGGTTTTCGCTATCAGGTTGATTTAGCCAGTGCGCTAAGTA
ACCTCACTGCTGAGCAATTTGTCGACCAAACCGCGCATTTAACCATTCTGCGTGACGGGCAAGTGGTGCAGCAAATAAAC
GGTATTGTGCGTCAATTCAGCAAAGGGGATACCGGCCATCGACATACTTTCTATTCATTAACGCTAGTTCCTGCGTTGGA
AAGGCTTTCTTTACGCAGTAATAGCCGTATTTTCCAGCAGCAAAGCGTGCCAGAGATTATCTCTATTTTACTGCAAGAGA
TGGGGATTGAAGATTACGCCTTTGCCCTTAAGCGTGAGTGTGCCCAGCGAGAGTTTTGTGTACAGTATCGTGAAACGGAT
TTGCAGTTTTTACACCGTATCGCCGCCGAAGAAGGCTTGGTATACAGTCACCTACATGAAGCGCAGAAACACACCTTGCT
GTTTACCGATAGCTCGGACAGCCAACCGAAGTTAGCCAAGCCAGTACCTTATAATGCGCTGGCGGGTGGCGAGATCAATC
TCCCTTATGTGGTCGATCTGCAATTCAAGACCACCGCGCAAGTGAGCCATACCGAGCTAAAGGATTACAGCTTTAAAAAG
CCAGCTTACGGATTTACTCAGCGCACGCAGGGTAAAGATATCGCTTATCAGCAGCCAAATTATGAGCATTTTGATGCTCC
GGGACGCTACAAAGACGATGCAAATGGCAAGGCCTTTAGCCAAATTCGCTTAGAGTATTTACGCCGCGATGCTTTGCTTG
CTGATGCGAAGAGTGACGAACCTTTGCTGTTGGCGGGAGTGCGTTTTGACTTGCAAGATCACCTTGATCTCGCAATGAAT
CGAGATTGGCTCGTGGTACAAGCCAATCACCAAGGGACGCAGCCACAAGCGTTACAAGAAGAGGGGGGGGCAGGCGCTAC
CACTTACAGCAATCAGCTAAAACTTATCCCCGCTCACATCACTTGGCGAGCAAGGCCTTGTGCTAAGCCGCAAGTGGATG
GTCCCATGATCGCTACCGTAGTTGGGCCACAAGGTGAAGAGATTTATTGTGATAACTTTGGTCGCGTGAAAGTGCATTTC
CCGTGGGATCGCTACTCAAGTAGCAACGAAAAAAGCTCTTGCTGGGTGCGAGTGGCACAAGAATGGGCGGGTAGCCAATA
CGGTAGTATGGCGATTCCGCGAGTTGGCCATGAAGTGATTGTTTCGTTTTTGAATGGCGATCCGGATCAACCCATCATCA
CAGGTCGTACGTATCATGCGACCAATACCGCGCCTTACGCCTTGCCTGACCACAAAACCAAAACCGTACTGCGCACTGAG
ACTCACCAAGGGCAAGGCTACAACGAACTGAGTTTTGAGGATCAAGCGGGCAGCGAACAGATTTTGCTGCATGCACAAAA
AGATTGGGATGCGTTGATTGAGCATGATCACACCGAAGTGATTCGCCACGATCAGCATCTCACTGTGGACAATGATCGCT
TTACCCGCATTCAGCGCAACCAACATTTAACGGTTGAAGGTGAAGTCCGTAGCAAAATCGCACTCGATAGCAGCCATGAA
GTCGGCGCGTCACTACAACACAAAGTCGGGCAACACATTGCAGTCGAAGCGGGTAAAGAGATTTCACTCAAAAGCGGCGC
AAAAATCGTGGTTGAAGCCGGAGCGGAGTTAACCCTAAAAGCAGGGGGCAGCTTTGTAAAAGTCGATGCAGGTGGCGTGC
ACTTAGTCGGTCCTGCCATTAACCTAAACGCGGGCGGCAGTGCAGGCAGCGGTAGCGCTTATGGTGGGCAATTAGCGGCA
GCACCGAGAATGTTAGCGCAAGCTAAACCAGTAGCAGAATTGGTTCAGCCGGATATTGCTGCCTCAATGCAATCAGGCGC
GGCGCGTGTTATTGATGTCGCATCACTCCCCACTATGATGCCGAGTTCAGCCAATAACACGGCAAATGATGAGCCTGTGG
CCGAAGAGAAAACACCGGAGCGAATTTTAAAATCCGATCTTCTCAAACCATCCGATGAGTTAGAGAAACTTGCCAAGCGA
CAAGCGAGTGCTTATCGTCAAGGTAATCACAGCGATGAGGTTAAGTTACTACAAGAAGCACTCATAAAACTGGGGTTTGA
CCTCGGGAAAGCAGGAGCTGATGGTGACTTTGGGAGCAAAACTAAAACCGCGATTGAGCAGTTCCAGAAAAGCTATCAAC
CAAGCCACCAAACACACCCGTCTTACAGCATTGGCCCCGTTGACGGTATTGTCGGCAACGGTACACTACTGGCACTAGAT
GAAGCCTTGATGGATGGGTGGGTGTATGAAAATGATGAGATGGATTTGAAATGGTTGACTGTACCCAAAGGTCAGCTCAC
TTTTGATGCCGAAGGGAATGATGTTGATTCATCAACTTTTTTTTCTAGAAAAGTGCACGTACCTAATATGAGAGGTAGCG
TTATTGGAAATTCAGGCGTGACCATCGGGCGGGGACTTGATTTAGGTAATCCTCCAAGTGCTGCCAGTGGGCAAACACCT
TCAAAAATAAACTTGAAAGAGTTATTTGAATTGGCCAACCTTAATCCGAAATTGTCAAAATGGTTATTAAGTGTTGAGGG
AAAAACGAAGGATTCGGCATTAGAGTCTCTTAAGAATAGTGGTTTGTCTGATGAGGAGTTAACGATTACTAGAAAGCAAC
AGTACATAATGTTTAATCATGTATATGACTATCTAGAAGAGAAGACAAGGGTATTAATAACAAAGCCAGACGTAAAAGCT
GCATATGGTTCTGTTGATTGGGATGGAATGCCAAGAAATGTGAAAGATGTATTAGTAGATATTACTTATCGTGGTGATAG
TTATTCTAAAACACGAGCATGGTATGTTCCAACTTTAGTTAATGACAGAAATTCTGTAGATTATTCAAACTTCAAAAAAT
CGTTGGATTATAAAAATTCAATATGGGATAAAGTGCCCTTGAGTAGAAAGAGAGTAAGATATGAACATCTTTAA