Detailed information of component protein


Summary

Component ID T6CP016012
Component protein type TssA
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (469 a.a.); Nucleotide sequence (1407 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BL246_RS05980
Coordinate (Strand) 88731..90137 (+)
NCBI ID 1133529384
RefSeq NZ_MOLM01000011
Uniprot ID A0A023PT92_VIBCL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.9e-74 215..463
ImpA_N PF06812.14 9.6e-25 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-468 MEMTEYRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLVYLLQCLHNQVTPTRLITSFAVMSEFLNQYWNDSYPAPGARGNLPRRKFFSQMAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVEKQGLSSELVESVVVRITAEIKRAEQRQQVTAQSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIALSIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLALWRKVEQSLTMAPYWFEGQWMSYTIAQQLGKSDWCLAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALSMLNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 469 a.a.    

>T6CP016012 NZ_MOLM01000011:88731-90137 [Vibrio cholerae] [TssA]
MEMTEYRQCVAKPISSSNPVGERLVDHPLFDFIEDQMMKVGSLSHASVQWDEVEHSTLKLLGEQSKDIKLLVYLLQCLHN
QVTPTRLITSFAVMSEFLNQYWNDSYPAPGARGNLPRRKFFSQMAQRFTTVIEKFDFHHLDEADRQALQAAVEEWQQAVE
KQGLSSELVESVVVRITAEIKRAEQRQQVTAQSAERETPSAATPSPAASMVVDHSSDKAAKQTLLKVADFLAEQEFGIAL
SIRLRRFAVWGSITSLPDHKPDGETLLRGMQADRVKDYQDQLRHPDLALWRKVEQSLTMAPYWFEGQWMSYTIAQQLGKS
DWCLAIAEETQQFLRRLPSLLELKFKGGEPFVSDSVKEWLASVGQSQGAAGQSVGGDWQEKRKEAFQLAKEGGIAVALSM
LNDGLVSAVEPRDKFYWRLLSADLLRANHLDAMAGEQYQTLLNQVTTLSVPEWEPSLVEQIQRYTTSE*

  Nucleotide sequence: 1407 bp    

>T6CP016012 NZ_MOLM01000011:88731-90137 [Vibrio cholerae] [TssA]
ATGGAAATGACTGAATACCGTCAGTGTGTGGCCAAACCGATCAGCAGTAGCAATCCTGTCGGAGAGCGGCTAGTCGATCA
CCCACTGTTTGATTTTATTGAAGATCAGATGATGAAAGTGGGCTCTCTCTCTCACGCTTCAGTGCAGTGGGATGAAGTGG
AGCACAGCACACTCAAACTGCTTGGTGAACAGAGTAAAGACATCAAGCTTTTGGTTTACCTGCTGCAGTGTCTGCATAAC
CAAGTTACCCCGACGCGCCTTATTACCTCGTTTGCTGTGATGAGTGAGTTCCTCAATCAATATTGGAACGACAGTTATCC
AGCGCCGGGCGCACGTGGCAATCTGCCGCGACGTAAATTTTTCAGCCAGATGGCGCAACGTTTTACCACGGTGATCGAAA
AGTTCGATTTTCATCATCTGGATGAAGCGGATCGCCAAGCGCTGCAAGCGGCGGTTGAAGAGTGGCAACAAGCCGTTGAG
AAACAAGGGCTCTCTTCTGAGTTGGTGGAGTCTGTGGTGGTGCGAATTACCGCGGAGATCAAACGCGCAGAGCAGCGCCA
GCAAGTGACGGCGCAAAGCGCGGAGCGTGAAACACCAAGTGCTGCAACGCCTTCTCCTGCGGCGAGCATGGTGGTGGATC
ATTCGAGTGACAAAGCAGCGAAACAAACCCTACTCAAAGTGGCAGATTTTCTTGCCGAACAAGAGTTTGGTATCGCGCTA
TCGATTCGTCTGCGCCGCTTTGCGGTGTGGGGCAGCATTACCTCATTGCCCGATCATAAACCCGATGGTGAAACACTGCT
GCGTGGAATGCAGGCGGATCGCGTCAAGGATTACCAAGATCAACTCCGTCACCCCGATTTAGCCTTGTGGCGCAAAGTCG
AACAGAGCTTAACCATGGCTCCTTATTGGTTTGAAGGACAGTGGATGAGTTACACCATTGCCCAGCAACTCGGCAAAAGT
GATTGGTGTCTGGCGATTGCCGAAGAAACACAACAGTTTTTACGTCGTTTGCCTTCGCTGCTTGAGCTCAAATTCAAAGG
CGGAGAGCCATTTGTCAGCGATTCGGTCAAAGAGTGGCTGGCGAGCGTAGGTCAGAGCCAAGGTGCTGCGGGGCAATCGG
TCGGCGGAGATTGGCAAGAGAAGCGTAAAGAGGCGTTTCAACTGGCCAAAGAAGGCGGAATCGCGGTGGCACTTTCCATG
CTCAATGATGGCTTGGTCAGTGCGGTGGAGCCGCGTGACAAATTTTACTGGCGATTGCTATCGGCGGATCTGCTGCGGGC
AAATCATCTCGATGCGATGGCTGGTGAACAGTATCAAACTCTACTCAATCAGGTAACGACGCTGTCTGTTCCTGAGTGGG
AGCCGAGTTTAGTGGAACAAATTCAAAGATATACAACGTCAGAGTAA