Detailed information of component protein


Summary

Component ID T6CP016011
Component protein type TssH
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (870 a.a.); Nucleotide sequence (2610 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BL246_RS05965
Coordinate (Strand) 83864..86473 (+)
NCBI ID 446541785
RefSeq NZ_MOLM01000011
Uniprot ID UPI00019F7613
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.6e-37 607..768
AAA_lid_9 PF17871.3 1.2e-28 361..452
ClpB_D2-small PF10431.11 3.6e-11 774..848
AAA PF00004.31 8.7e-10 221..351
Clp_N PF02861.22 4.3e-06 24..71
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-869 VIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETTVAKTDKNAANPLQAAAETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALRVVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALTQSWQQQKSLVESIIALRAELMELSQAQEQDPDHLLVVRTALQEQYQALDAIDHAERLMHPQVDADQIAEVIADWTGVPVDQMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDCQNIVFFLTSNLGYQTIVDYADEPAKLDEALYPELAAFFKPALLARMEVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNAEVVIEESLIDEILSRATRSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFIGEVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9882 - -


  Protein sequence: 870 a.a.    

>T6CP016011 NZ_MOLM01000011:83864-86473 [Vibrio cholerae] [TssH]
VIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIASTYSREQV
LDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETTV
AKTDKNAANPLQAAAETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALR
VVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPA
LARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYIS
GRQLPDKAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALT
QSWQQQKSLVESIIALRAELMELSQAQEQDPDHLLVVRTALQEQYQALDAIDHAERLMHPQVDADQIAEVIADWTGVPVD
QMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFL
TTINMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDC
QNIVFFLTSNLGYQTIVDYADEPAKLDEALYPELAAFFKPALLARMEVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNA
EVVIEESLIDEILSRATRSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFIGEVA*

  Nucleotide sequence: 2610 bp    

>T6CP016011 NZ_MOLM01000011:83864-86473 [Vibrio cholerae] [TssH]
GTGATCCGTATTGAATTACCCACTCTTATTGCAAAACTGAATGCACAAAGCAAATTGGCTCTGGAGCAAGCGGCCTCTCT
CTGTATTGAGCGCCAACACCCTGAAGTCACTCTAGAACATTATCTGGATGTGTTACTGGATAATCCCCTCTCTGATGTGC
GTCTCGTACTCAAGCAAGCGGGGCTGGAAGTCGATCAGGTGAAACAGGCCATCGCATCAACCTATAGCCGTGAACAGGTC
TTGGATACCTATCCAGCGTTTTCGCCACTGCTGGTCGAGTTACTGCAAGAAGCTTGGCTGCTTTCCAGTACCGAGTTAGA
GCAGGCTGAACTGCGTTCAGGGGCGATTTTCTTAGCCGCGCTGACCCGTGCGGACCGTTATCTATCGTTCAAATTGATCA
GTTTGTTTGAAGGCATCAACCGCGAAAACCTCAAAAAACACTTTGCGATGATCTTAAGTGATTCTGCAGAAACCACAGTG
GCTAAAACAGACAAAAATGCGGCCAATCCACTGCAAGCCGCCGCAGAAACACCACTCGGACGCTTTTGCACGAATGTGAC
TGAGCAAGCCCGTAACGGTGAGCTTGATCCTGTCCTGAGCCGTGAAAACGAACTCAACTTGATGGTGGATATTCTGTGCC
GTCGCCGCAAAAACAACCCGATTGTGGTGGGTGAAGCAGGTGTTGGTAAAAGTGCCATGATTGAAGGTTTGGCGCTGCGT
GTGGTGGCTGGCAAAGTGCCCACCCAACTGCAAAATGTGGAACTCTATTCGTTGGATCTTGGTCGCTTGCAAGCGGGGGC
ATCGGTGAAAGGCGAGTTCGAAAAGCGCCTAAAAGGGGTGATTGATGCGATTAAGCAATCGCCTAAACCGATCATTTTAT
TCATCGATGAAGCGCACACCTTAATTGGTTCTGGTAACCAAGAAGGGGGCAGTGATGCGGCAAACTTGCTCAAGCCTGCG
CTGGCGCGTGGTGAGTTAAGCACAGTGGCGGCGACGACGTGGAAAGAGTACAAAAAGTATTTTGAAAAAGATCCCGCGCT
GACGCGCCGTTTCCAACTGGTCAAACTCGATGAACCAACGATCGATCAAGCCGTCGATATTCTGCGCGGTCTTAACAGTG
TCTATGAAAAGGCACACAACGTACTCATCACTGATGATGCACTAAAAGCTGCCGCTGAGCTGTCAGCGCGTTACATCTCA
GGTCGTCAACTGCCCGATAAAGCGATTGATGTGCTGGATACCGCTTGTGCGCGGATTGCGATCAATATGACCACGCCACC
TAAGCGTTTAGCGCTACTTGAAACCTTGTGCCATCAGCGTCAACTCGAAATTGACATGCTAGAGCGGGCGCAATTCCTTG
GCCAAGAGGTCGATAGCGAGCGCCTTGATGTTCTGCGTAATCAAGAGTTGGCCGATGAAGCGGAAAAAGCCGCGTTGACA
CAGAGTTGGCAGCAGCAAAAAAGCTTGGTGGAGTCGATCATAGCACTGCGTGCTGAGCTGATGGAGTTAAGCCAAGCGCA
AGAGCAAGATCCCGACCATTTATTGGTGGTGCGTACGGCGCTGCAAGAGCAGTATCAAGCACTCGATGCGATTGATCATG
CTGAGCGCTTGATGCACCCGCAAGTCGATGCGGATCAGATTGCTGAAGTGATCGCCGATTGGACGGGCGTGCCTGTTGAT
CAGATGAACACCGATGAGCTGCATAAAATCACCCATTTGACCTCGATTTTAGGCCAAGCGATCAAAGGCCAAGAAACGGC
CATCGAACGTATCCATCGTCATTTACTGACAGCGCGTGCCGATCTGCGTCGTCCGGGACGTCCGAAAGGGGCATTCCTGC
TGGTGGGGCCAAGCGGTGTAGGTAAAACCGAAACGGTAGTGCAACTGGCAGAGCAGCTTTACGGTGGTAAACAGTTCCTC
ACCACCATCAACATGTCGGAATACCAAGAGAAACACACCGTTTCCCGCCTGATTGGTTCACCTCCGGGTTATGTTGGCTA
CGGTGAAGGCGGTGTGCTGACGGAGGCTATCCGTAAGATGCCTTATTCGGTGGTTCTGCTTGATGAAGTCGAAAAAGCCC
ATCCAGAAGTTTTAAATATCTTCTACCAAGGCTTTGATAAAGGCGAAATCGCCGATGGTGAAGGTCGTGTTATCGACTGC
CAAAACATCGTGTTCTTCCTGACATCGAACTTAGGCTACCAAACCATAGTCGATTATGCCGATGAGCCCGCCAAGCTTGA
TGAAGCGCTTTATCCTGAATTGGCCGCTTTCTTTAAACCTGCTCTGCTGGCGCGTATGGAAGTGATCCCTTACCTACCAC
TGGGTAAAGAAGTGTTGGCACAGATTGTTCGCGGCAAGCTGGCTCGTCTCGAGAAACTGTTCAAGACACGTTACAACGCA
GAAGTGGTGATTGAAGAGAGCTTAATTGACGAAATCTTAAGCCGTGCGACACGCAGCGAAAACGGTGCGCGTATGCTGGA
GGCGATCATTGAAGGGCAATTGCTGCCGCCCGTTTCATTGGCGCTGCTGAATAAACTCGCCGAGAGAGCGCCCGTTGAGC
GCATTCGTTTAGCGGCAGAAGCGGGTGAATTTATCGGAGAGGTAGCGTAA