Detailed information of component protein


Summary

Component ID T6CP016007
Component protein type TagH
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (495 a.a.); Nucleotide sequence (1485 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BL246_RS05945
Coordinate (Strand) 79758..81242 (+)
NCBI ID 1133529381
RefSeq NZ_MOLM01000011
Uniprot ID A0A023PRG9_VIBCL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 2.8e-05 35..102
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-494 MNSVTLPSLTLLVTNAQHLESGLSAQHTWTSSGGVIGSSPNAQWRLVDAQGSVKPMHCEVMMVDGAYCLKDSCGSTYVNGADMPLGVGQMARLTHKDEVSVGPYRLRVLFGNAIEVEEQYGSLDALFASKDEDLLADLTFDIEPEKNELPTNTDPLQALDNLMGAAGSSTSLLDDPKSEQPLSQPSLVPQDNLLLQNADFTPQADSEYEMTSSIRLKKILGFAKATFAKQTKSEAPNVTSATPTISQYKTSESNVSEGFTMDEKVLDLLEEEVAKSFQPQLEKSAYSTMHTSSTSQANHLVTGPILEGLGVDLSDENDMNRMHLLSQELGESLQACVRGLLDLHQQVSESRFGTLNRNLQPIEDNPLRLGLSYEETIRTLYDADKSVVHLSAPAAIAESLKTVRDHNEAMQFATSEALSQILNAFSPQVMLRRFHHYKRNSDTTQTSTDAWAWNMYCSYYQELTSNRQRGFEKLFWEIFEQAYDRKIREKQLEL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
SP(Sec/SPI) 0.4778 pos: 16-17. TNA-QH. MNSVTLPSLTLLVTNA


  Protein sequence: 495 a.a.    

>T6CP016007 NZ_MOLM01000011:79758-81242 [Vibrio cholerae] [TagH]
MNSVTLPSLTLLVTNAQHLESGLSAQHTWTSSGGVIGSSPNAQWRLVDAQGSVKPMHCEVMMVDGAYCLKDSCGSTYVNG
ADMPLGVGQMARLTHKDEVSVGPYRLRVLFGNAIEVEEQYGSLDALFASKDEDLLADLTFDIEPEKNELPTNTDPLQALD
NLMGAAGSSTSLLDDPKSEQPLSQPSLVPQDNLLLQNADFTPQADSEYEMTSSIRLKKILGFAKATFAKQTKSEAPNVTS
ATPTISQYKTSESNVSEGFTMDEKVLDLLEEEVAKSFQPQLEKSAYSTMHTSSTSQANHLVTGPILEGLGVDLSDENDMN
RMHLLSQELGESLQACVRGLLDLHQQVSESRFGTLNRNLQPIEDNPLRLGLSYEETIRTLYDADKSVVHLSAPAAIAESL
KTVRDHNEAMQFATSEALSQILNAFSPQVMLRRFHHYKRNSDTTQTSTDAWAWNMYCSYYQELTSNRQRGFEKLFWEIFE
QAYDRKIREKQLEL*

  Nucleotide sequence: 1485 bp    

>T6CP016007 NZ_MOLM01000011:79758-81242 [Vibrio cholerae] [TagH]
ATGAACTCAGTGACATTACCTTCGTTGACCCTATTAGTCACCAATGCTCAGCACTTAGAGTCTGGCTTGTCCGCTCAGCA
TACGTGGACCTCGTCAGGTGGGGTGATCGGCTCATCGCCGAATGCGCAGTGGCGTTTGGTCGATGCGCAAGGCAGTGTAA
AACCCATGCACTGTGAAGTGATGATGGTAGACGGGGCGTATTGTTTAAAAGACAGCTGCGGCAGCACGTATGTCAACGGG
GCAGACATGCCACTGGGCGTTGGGCAAATGGCACGTCTGACTCACAAAGATGAAGTGAGTGTGGGGCCTTACCGTTTGCG
AGTGCTGTTTGGTAACGCCATCGAAGTGGAAGAACAATATGGATCTTTAGATGCGCTGTTTGCCTCTAAGGATGAGGATC
TGCTGGCGGATTTGACGTTCGACATCGAACCAGAAAAAAACGAATTACCAACCAATACAGACCCATTACAGGCGCTCGAT
AACCTGATGGGTGCGGCGGGCAGTTCGACCTCCTTACTGGATGATCCTAAAAGTGAGCAGCCGTTATCCCAACCTAGCCT
CGTGCCACAAGATAACTTATTGCTGCAAAATGCCGATTTTACGCCACAAGCGGACAGTGAGTATGAGATGACCTCATCGA
TCCGCCTTAAGAAAATTCTTGGTTTTGCGAAGGCCACCTTTGCTAAGCAAACCAAATCAGAAGCACCGAACGTGACTTCT
GCCACCCCCACAATTTCTCAATATAAAACCAGCGAAAGCAACGTATCAGAGGGCTTCACAATGGATGAAAAAGTACTGGA
TTTGTTAGAAGAGGAAGTCGCGAAAAGTTTCCAACCGCAGTTGGAGAAAAGCGCGTATTCCACTATGCACACAAGCTCAA
CCAGCCAAGCTAACCACTTGGTGACAGGTCCGATCTTGGAAGGGCTCGGCGTAGACCTGAGTGATGAAAATGATATGAAT
CGTATGCATCTTTTATCGCAAGAGCTGGGTGAGTCTTTGCAAGCTTGTGTGCGCGGTTTACTCGATTTGCATCAACAAGT
GAGTGAAAGCCGTTTCGGTACTTTGAACCGTAATCTGCAACCCATTGAAGATAACCCGCTGCGTTTAGGCCTCTCCTATG
AAGAGACGATCCGCACTCTGTACGATGCTGATAAGAGCGTCGTGCACCTTTCTGCCCCTGCGGCGATTGCTGAAAGCCTA
AAAACCGTTCGCGATCATAATGAAGCGATGCAGTTCGCCACGTCAGAAGCCTTGAGCCAAATTCTCAACGCTTTCTCACC
ACAGGTGATGCTGCGCCGTTTCCACCACTACAAGCGCAATTCTGATACCACACAAACTTCCACGGATGCTTGGGCGTGGA
ATATGTACTGCAGCTACTACCAAGAGCTGACCTCTAACCGCCAACGCGGCTTTGAGAAGTTGTTTTGGGAGATCTTTGAG
CAAGCCTACGATCGCAAAATTCGCGAGAAGCAACTGGAGCTATAA