Detailed information of component protein


Summary

Component ID T6CP016006
Component protein type TssG
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BL246_RS05940
Coordinate (Strand) 78739..79755 (+)
NCBI ID 487887020
RefSeq NZ_MOLM01000011
Uniprot ID A0A023PRJ1_VIBCL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.3e-88 28..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-338 MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEARDDDRWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTKQNIALGWTSFLGQDAANKHVLIQVRQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9792 - -


  Protein sequence: 339 a.a.    

>T6CP016006 NZ_MOLM01000011:78739-79755 [Vibrio cholerae] [TssG]
MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEAR
DDDRWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMD
TVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTKQNIALGWT
SFLGQDAANKHVLIQVRQ*

  Nucleotide sequence: 1017 bp    

>T6CP016006 NZ_MOLM01000011:78739-79755 [Vibrio cholerae] [TssG]
ATGGGGCACACAGAGCGGAATGCAGCCGTTGATCTGAATTCAGATCCAGCGCAAGCCTCTCCCCTGAGCTTGCCGGGCAA
TGTACGGGAATACAACTTCTACCAACTGGTTGAGCTGTTGCAAAAACTGGCTGATATCAATCCTGAATCGGAAGAGTGGG
AGCGCGATTGCCGCTTGGTGTTCAGTGCTAACCCGAGCCTTGGATTTTCGCCCAGTGATGTGATGGCGCTTGAAGCGCGT
GACGATGATCGCTGGGTTATGTTGACCAACTTTTTTGGCCTTTCCGGTGCACAGTCACCTCTGCCGGGGTTCATCCTTGA
GCAATTGGTGACGGAAGAGCCTGGGGGGTATAAGCAGCCGTTTCTCGATTTTTTCAATAACCGATTGATTAATTTGGTTT
ATCGCGTTTGGCGTAAATACCGTTACTACGTACGTTTTCAGCCCGGTGCGCAGGATGTGTTCTCTGCACAGCTGTTTGCG
CTGGTGGGGTTGGGCGATCCTGACCTTCGCGGTGAAACGCCGATCAACTGGTGCAAAATGCTGGCTTACGCGGGCACGCT
GGCCGGACGTAGCCGTTCGCCACAAGTCGTGGCCGGCATTATTGCTCACTGTTTTGATTTACCGGATGTCTCCATTCGCC
AGTGGGTCAGACGTCGGGTATCGATTGATCGGAGTCAGCAACTGGCGCTGGGCAAGCAGAATGCGCGGTTGGGGATGGAC
ACGGTGATTGGCGAGTCCGTTATTGATTGCAGTGGAAAATTTATTATCTGTATCAAACGGTTATCTCGCAGTCGTTTTGC
TGACTTTTTGCCCTCCGGTAAAGAGTATCAGCCACTTTGCAAGCTGGTGGAGTTTATTTTGCGCGAACAGATGGCGTACG
ACCTCGAGCTGGCGATGGATGAACGGGAAGCGCCGCTGTTTTGTCTGGATACTAAACAGAATATCGCCCTCGGCTGGACT
TCGTTTCTTGGCCAAGATGCAGCCAATAAACATGTGTTAATTCAAGTAAGGCAATAA