Detailed information of component protein


Summary

Component ID T6CP016004
Component protein type TssE
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (146 a.a.); Nucleotide sequence (438 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BL246_RS05930
Coordinate (Strand) 76563..77000 (+)
NCBI ID 446143145
RefSeq NZ_MOLM01000011
Uniprot ID Q9KN56_VIBCH, A0A0X1L1X4_VIBCO, D7HAV1_VIBCL, A0A0K9UXR3_VIBCL, A0A0H3Q272_VIBCL, C3LUD3_VIBCM, A0A023PTG3_VIBCL
KEGG ID vch:VC_A0109, vcq:EN18_04270, vcx:VAA049_1799, vcz:VAB027_920, vcm:VCM66_A0107
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3e-17 38..124

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-145 MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVRIKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -



  Protein sequence: 146 a.a.    

>T6CP016004 NZ_MOLM01000011:76563-77000 [Vibrio cholerae] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*

  Nucleotide sequence: 438 bp    

>T6CP016004 NZ_MOLM01000011:76563-77000 [Vibrio cholerae] [TssE]
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGATGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGCGTTCTGGTGAGAGCGGATCAAGATAG
CTTTAACCCGCTGACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTC
TGTTATTGGATCAAAGCAGAAAATATCGAGTGTTTTAA