Detailed information of component protein
Summary
| Component ID | T6CP016004 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01290  (Type i1) |
| Strain | Vibrio cholerae DL4215 |
| Replicon | chromosome |
| Sequence | Protein sequence (146 a.a.); Nucleotide sequence (438 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BL246_RS05930 |
| Coordinate (Strand) | 76563..77000 (+) |
| NCBI ID | 446143145 |
| RefSeq | NZ_MOLM01000011 |
| Uniprot ID | Q9KN56_VIBCH, A0A0X1L1X4_VIBCO, D7HAV1_VIBCL, A0A0K9UXR3_VIBCL, A0A0H3Q272_VIBCL, C3LUD3_VIBCM, A0A023PTG3_VIBCL |
| KEGG ID | vch:VCA0109, vcm:VCM66_A0107, vcq:EN18_04270, vcx:VAA049_1799, vcz:VAB027_920 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 3e-17 | 38..124 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-145 | MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVRIKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9889 | - | - |
Protein sequence: 146 a.a.
>T6CP016004 NZ_MOLM01000011:76563-77000 [Vibrio cholerae] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*
Nucleotide sequence: 438 bp
>T6CP016004 NZ_MOLM01000011:76563-77000 [Vibrio cholerae] [TssE]
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGATGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGCGTTCTGGTGAGAGCGGATCAAGATAG
CTTTAACCCGCTGACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTC
TGTTATTGGATCAAAGCAGAAAATATCGAGTGTTTTAA
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGATGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGCGTTCTGGTGAGAGCGGATCAAGATAG
CTTTAACCCGCTGACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTC
TGTTATTGGATCAAAGCAGAAAATATCGAGTGTTTTAA