Detailed information of component protein


Summary

Component ID T6CP016003
Component protein type TssC
T6SS ID (Type) T6SS01290 experimental (Type i1)
Strain Vibrio cholerae DL4215
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BL246_RS05925
Coordinate (Strand) 75085..76560 (+)
NCBI ID 446030285
RefSeq NZ_MOLM01000011
Uniprot ID UPI0002046A59
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.6e-127 65..364
VipB_2 PF18945.2 1.8e-45 377..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MSTTEKVLERPQLAQGSLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVELDKKISAQMDEILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQSGLYKHVYSAGYGQFGGEPVGAIIGNYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAPRFLLRVPYDPIENPVKSFNYAENVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANFELSLVGRLDQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -


  Protein sequence: 492 a.a.    

>T6CP016003 NZ_MOLM01000011:75085-76560 [Vibrio cholerae] [TssC]
MSTTEKVLERPQLAQGSLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVELDKKISAQMD
EILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQSGLYKHVYSAGYGQFGGEPVGAIIG
NYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAP
RFLLRVPYDPIENPVKSFNYAENVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANF
ELSLVGRLDQA*

  Nucleotide sequence: 1476 bp    

>T6CP016003 NZ_MOLM01000011:75085-76560 [Vibrio cholerae] [TssC]
ATGTCTACGACTGAAAAGGTATTGGAAAGGCCACAGCTTGCTCAAGGCAGCCTTCTTGATGAAATTATGGCGCAAACCCG
TATCGCACCAAGCGAAGAGGGTTACGACATCGCGAAAAAAGGTGTTGCAGCGTTTATCGAAAATCTTATGGGTTCACAAC
ACTCTGCTGAGCCTGTCAACAAATCTCTGGTTGACCAAATGTTGGTTGAACTGGATAAAAAAATCAGTGCACAGATGGAT
GAAATCCTGCACAACTCGCAATTCCAAGCGATGGAATCGGCGTGGCGCGGTTTGAAGCTGTTCGTGGATCGCACTGATTT
TCGTGAAAATAACAAAGTCGAAATCCTTCACGTAACCAAAGATGAACTGCTGGAAGATTTCGAGTTTGCTCCAGAAACGG
CTCAGTCCGGTCTTTACAAGCACGTTTATTCTGCCGGTTATGGTCAATTTGGTGGCGAACCTGTTGGCGCGATCATTGGT
AACTATGCGTTTACCCCTTCAACGCCAGATATGAAGCTGCTGCAATACATGGGCGCACTGGGTGCCATGGCGCATGCTCC
TTTCATTTCAAGCGTAGGTCCTGAATTCTTTGGTATCGACTCCTTCGAAGAACTACCTAACATTAAAGATCTCAAGTCGA
CATTTGAAAGCCCGAAATACACCAAATGGCGTTCACTGCGTGAATCGGAAGATGCGCGCTATCTTGGTTTGACCGCGCCT
CGTTTCCTGCTGCGTGTTCCTTACGATCCAATCGAAAATCCAGTGAAGTCGTTCAATTATGCGGAAAACGTCAGTGCTTC
GCACGAGCACTACCTGTGGGGTAACACGGCATTTGCCTTCGCAACTCGTTTGACGGATAGCTTTGCTAAATATCGCTGGT
GTCCAAACATTATCGGCCCACAAAGTGGTGGTGCAGTTGAAGATCTGCCGGTGCATGTCTTTGAATCTATGGGTGCATTG
CAAAGCAAGATCCCAACCGAAGTCCTGATCACGGACCGTAAAGAGTTTGAACTGGCGGAAGAAGGTTTTATTGCTCTTAC
TATGCGTAAAGGCAGTGATAACGCAGCGTTCTTCTCTGCAAACTCCATTCAAAAACCTAAGGTTTTCCCAAATACCAAAG
AAGGCAAAGAAGCGGAAACCAACTACAAGTTGGGTACCCAGTTGCCGTACATGATGATCATCAACCGTTTGGCACACTAT
GTGAAAGTTCTGCAACGTGAGCAGATCGGTGCTTGGAAAGAGCGTCAAGATCTTGAGCGTGAACTGAACTCATGGATCAA
ACAATACGTTGCTGATCAAGAGAACCCACCTGCAGACGTACGTAGCCGTCGTCCACTTCGTGCTGCGCGCATTGAAGTGA
TGGATGTGGAAGGCAATCCAGGTTGGTATCAGGTGTCGCTCTCGGTTCGTCCTCACTTTAAGTACATGGGTGCGAACTTT
GAGTTGTCATTAGTTGGACGTCTTGATCAAGCCTGA