Detailed information of component protein


Summary

Component ID T6CP015958
Component protein type TssK
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08905
Coordinate (Strand) 44562..45887 (+)
NCBI ID 545468490
RefSeq NZ_BATJ01000006
Uniprot ID U3A0Y6_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.6e-136 19..439
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MSLYNPVVWQDGMFMKPQHFQQLDRAQGKASGMLSTYSAPLHWGIKRLEINTELLALGKIGITRAEGVLQDRTPFELPLLADLPEVKEVDPSVTDKVVYLCCPLPSERSELFGTQRDGARYSMHPQEAVDSCYNSEDMANIMVGKLNFCLMYDHEDKSAFTSIPILKISEVKPDGSIVLDESFIPTCLDIKASTVLNKFVTEFASMLRHRAESIVQRLGVVDQQGVSSVSDFMLLQALNRYEPLFWHFAATEGVHPESLYRILLQAEGELSTLCSSARRPQEYVEYNHADLTACMSRTLESSKMTLSVMSEQRAIPLTLKEQNYGIRTAPIPDQRIVDSSTFILAVKADVPLDILHTQFVSQVKIGSIDNIRQLINLQLPGISIKPMPVVPRALPYHAGYTYFELDRNSEEWMALNNAAAIAVHVAGEFANLSLQLWAVRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -


  Protein sequence: 442 a.a.    

>T6CP015958 NZ_BATJ01000006:44562-45887 [Vibrio proteolyticus NBRC 13287] [TssK]
MSLYNPVVWQDGMFMKPQHFQQLDRAQGKASGMLSTYSAPLHWGIKRLEINTELLALGKIGITRAEGVLQDRTPFELPLL
ADLPEVKEVDPSVTDKVVYLCCPLPSERSELFGTQRDGARYSMHPQEAVDSCYNSEDMANIMVGKLNFCLMYDHEDKSAF
TSIPILKISEVKPDGSIVLDESFIPTCLDIKASTVLNKFVTEFASMLRHRAESIVQRLGVVDQQGVSSVSDFMLLQALNR
YEPLFWHFAATEGVHPESLYRILLQAEGELSTLCSSARRPQEYVEYNHADLTACMSRTLESSKMTLSVMSEQRAIPLTLK
EQNYGIRTAPIPDQRIVDSSTFILAVKADVPLDILHTQFVSQVKIGSIDNIRQLINLQLPGISIKPMPVVPRALPYHAGY
TYFELDRNSEEWMALNNAAAIAVHVAGEFANLSLQLWAVRL*

  Nucleotide sequence: 1326 bp    

>T6CP015958 NZ_BATJ01000006:44562-45887 [Vibrio proteolyticus NBRC 13287] [TssK]
ATGTCTTTATATAATCCAGTTGTATGGCAAGATGGTATGTTCATGAAGCCACAGCATTTCCAGCAGCTCGACCGGGCTCA
GGGAAAAGCGAGTGGTATGCTTAGCACATACAGTGCGCCACTGCATTGGGGAATTAAGCGTCTAGAGATCAACACGGAAC
TGCTGGCGCTCGGAAAAATCGGTATTACCCGTGCAGAGGGGGTTTTGCAGGATCGTACCCCATTTGAACTGCCGCTGCTG
GCCGATCTACCAGAAGTAAAAGAAGTGGATCCGTCAGTCACTGACAAAGTCGTGTATTTGTGCTGCCCTTTGCCTTCAGA
GCGCTCAGAATTATTCGGTACGCAACGTGATGGTGCTCGTTATTCCATGCACCCACAAGAAGCTGTGGATTCATGTTACA
ACAGTGAAGACATGGCTAATATCATGGTCGGGAAGCTGAATTTTTGTTTGATGTACGATCATGAAGATAAGAGTGCTTTT
ACCTCAATTCCGATCCTCAAGATTTCTGAAGTAAAACCAGACGGCAGTATTGTTCTGGATGAGAGTTTTATCCCGACCTG
TCTGGATATCAAAGCGTCGACGGTATTGAATAAATTCGTGACCGAATTTGCCTCGATGCTGCGTCATCGCGCAGAATCCA
TTGTTCAGCGCCTGGGCGTGGTGGATCAGCAGGGGGTTTCATCGGTTTCTGATTTTATGTTGCTTCAGGCATTGAATCGT
TATGAACCACTGTTCTGGCATTTTGCCGCGACGGAAGGGGTGCATCCGGAATCCTTGTATCGAATTCTGCTGCAGGCAGA
AGGCGAATTGTCGACCTTATGTTCTTCTGCGCGTCGCCCGCAAGAGTATGTGGAATACAATCACGCTGACCTAACGGCAT
GCATGAGCCGTACACTGGAAAGTTCGAAGATGACCTTGAGCGTTATGTCTGAGCAGCGCGCAATTCCGTTGACGCTGAAA
GAGCAGAATTACGGTATTCGCACTGCACCGATTCCGGATCAGCGAATTGTTGATTCTTCAACGTTCATCCTTGCGGTGAA
AGCCGATGTTCCTCTGGATATCCTGCATACACAATTTGTAAGTCAGGTGAAGATCGGTTCTATCGACAACATCCGTCAGT
TGATCAACTTGCAGTTGCCAGGCATTAGCATCAAGCCGATGCCAGTTGTGCCACGCGCCTTGCCATACCACGCCGGTTAC
ACCTATTTCGAACTGGATCGCAACAGCGAAGAGTGGATGGCGCTGAATAATGCCGCTGCGATCGCTGTTCACGTAGCGGG
TGAGTTCGCTAACCTGTCACTACAACTGTGGGCTGTGAGATTATGA