Detailed information of component protein


Summary

Component ID T6CP015956
Component protein type TssA
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08885
Coordinate (Strand) 39976..41328 (-)
NCBI ID 545468486
RefSeq NZ_BATJ01000006
Uniprot ID U3BK57_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 5.6e-24 9..119
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-240 MYFSDFARRPIDHEHPSGINPNGLEEFDEIKRQINNINKVTGRVSWKKVEELSKQVLTQHGKDFRCACYFGVAATNNHGLKGLVEGLNAIYDLCVVYWHSGYPTEDKANARMSSIEWFVEYAERRQKHINPSEQDLPLIEAGHRLTLKIEEELRLHYGIKAPSLGAIRRIFTQWIEQLKTEMAKREEAVKQQTASVAQPAPAPRSQPMMKMDVSPSPSPTSATPVNVSPSAASEPEKKRS
Transmembrane helix 241-263 GMGFFMAALAVVVLVALFSHFVY
Inside 264-450 QDRRVEAMKTQIEIASINQLVPLANAIKLEDNSTKQAIKDTLLQRVSALVNGWDLDPIRVSQIDDIGSVTQTVTELYPDSSSAQSLSATFEQSRADLEAEYQKLSAEFKQARTVFANAKAKNNDKASIERAYRYSNTLFPLLGRIEYAAQNQMPEEVAKSQRLLNIYQHKLNELKVELQQEQSATAQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9833 - -


  Protein sequence: 451 a.a.    

>T6CP015956 NZ_BATJ01000006:c41328-39976 [Vibrio proteolyticus NBRC 13287] [TssA]
MYFSDFARRPIDHEHPSGINPNGLEEFDEIKRQINNINKVTGRVSWKKVEELSKQVLTQHGKDFRCACYFGVAATNNHGL
KGLVEGLNAIYDLCVVYWHSGYPTEDKANARMSSIEWFVEYAERRQKHINPSEQDLPLIEAGHRLTLKIEEELRLHYGIK
APSLGAIRRIFTQWIEQLKTEMAKREEAVKQQTASVAQPAPAPRSQPMMKMDVSPSPSPTSATPVNVSPSAASEPEKKRS
GMGFFMAALAVVVLVALFSHFVYQDRRVEAMKTQIEIASINQLVPLANAIKLEDNSTKQAIKDTLLQRVSALVNGWDLDP
IRVSQIDDIGSVTQTVTELYPDSSSAQSLSATFEQSRADLEAEYQKLSAEFKQARTVFANAKAKNNDKASIERAYRYSNT
LFPLLGRIEYAAQNQMPEEVAKSQRLLNIYQHKLNELKVELQQEQSATAQ*

  Nucleotide sequence: 1353 bp    

>T6CP015956 NZ_BATJ01000006:c41328-39976 [Vibrio proteolyticus NBRC 13287] [TssA]
ATGTACTTCTCGGATTTTGCTCGTCGACCGATAGATCATGAGCATCCCAGTGGCATTAATCCAAACGGCCTAGAAGAATT
TGACGAAATTAAACGTCAAATCAACAACATCAACAAAGTTACTGGCCGTGTTTCATGGAAAAAAGTGGAAGAACTATCAA
AACAGGTTCTGACACAACATGGAAAGGATTTTCGCTGCGCGTGTTACTTCGGTGTCGCTGCCACCAATAATCATGGCCTG
AAAGGCCTGGTAGAAGGTCTTAACGCCATCTACGATTTATGCGTGGTGTATTGGCACTCCGGCTACCCGACGGAAGACAA
GGCCAATGCCCGCATGTCTTCCATCGAGTGGTTTGTCGAATACGCGGAACGTCGCCAAAAACACATCAATCCTTCTGAGC
AGGATCTGCCTCTTATTGAGGCAGGGCATCGATTGACCCTCAAGATAGAAGAAGAGCTGCGTCTGCACTACGGTATCAAA
GCCCCCTCTTTAGGCGCGATTCGACGCATTTTTACGCAGTGGATTGAACAGCTCAAAACCGAAATGGCTAAGCGAGAAGA
AGCCGTCAAACAACAAACCGCTTCTGTTGCTCAGCCAGCCCCTGCACCTCGCTCGCAGCCTATGATGAAGATGGATGTGT
CACCCTCTCCATCACCGACATCTGCGACTCCAGTGAACGTCTCACCCTCTGCGGCTTCAGAGCCAGAAAAAAAGCGCTCA
GGAATGGGTTTCTTCATGGCAGCGTTAGCCGTGGTGGTTCTTGTTGCTCTGTTTAGCCATTTTGTTTATCAGGACAGAAG
AGTTGAGGCAATGAAGACGCAAATAGAGATTGCGTCGATCAATCAGTTGGTACCTCTGGCCAATGCCATCAAGCTTGAAG
ACAATTCCACGAAACAAGCCATCAAAGATACGCTATTGCAACGCGTATCCGCGTTGGTAAACGGCTGGGATCTCGACCCT
ATCCGCGTCAGTCAAATTGATGACATCGGTAGCGTCACACAAACCGTCACTGAACTGTACCCCGATTCATCATCGGCACA
GTCTCTGTCAGCAACATTCGAACAGAGCCGCGCGGACCTGGAAGCGGAGTATCAGAAACTCAGCGCCGAGTTCAAACAAG
CACGCACCGTATTTGCAAACGCCAAGGCGAAAAACAACGACAAAGCCAGCATAGAAAGAGCCTACCGTTACAGTAATACC
CTCTTCCCTTTACTGGGCCGCATTGAATATGCCGCTCAAAATCAAATGCCGGAAGAAGTCGCAAAGTCTCAGCGTTTACT
GAATATCTATCAACACAAACTCAATGAGTTAAAAGTGGAGCTGCAACAAGAACAGTCCGCCACCGCTCAATAA