Detailed information of component protein
Summary
| Component ID | T6CP015955 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00945  (Type i1) |
| Strain | Vibrio proteolyticus NBRC 13287 |
| Replicon | chromosome II |
| Sequence | Protein sequence (1131 a.a.); Nucleotide sequence (3393 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 36549..39941 (-) |
| NCBI ID | 750620620 |
| RefSeq | NZ_BATJ01000006 |
| Uniprot ID | UPI000593B968 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-11 | MFKKNLVRNPV |
| Transmembrane helix | 12-34 | FLSTLLALIGVAITLTVYFVWFA |
| Outside | 35-38 | ESSA |
| Transmembrane helix | 39-61 | WYLYGPLAAILVIYATFNTILWV |
| Inside | 62-401 | KKRRQQKSQQLETEEETLSMVLRPLLQRASKKSIYLILGNKSSGKAQFLHTSNAIKPMDRPNTIKNDFFEWYESDSAIYIKPDRRLVFQEVSSADSALWHTLVNEVIRLRPRKPFSGCLFFIDFEFLIVHEDEQVDYTLTALLQRLEYIGQETAAAIPLYLVMSKLDKLDGFKEYVHFSPLKTAIEYLSIPLKDAKGAMIDYFNDSFTNLVKVMESNALDSSSHSNNVDEKKAILAFPKQFELCQGEVRNVVERLNSLNHGSYCLDIREVFFSSNLQGGRKYNLLAKSCSNYFNLPIIASEHSHLSETPYFTRFLVESQILPEADFAGENKTYLRRIQRH |
| Transmembrane helix | 402-424 | SYLSMAASVAIILGGGYLLFQVL |
| Outside | 425-1130 | DSNLNVMNQMIGVEGTEESDDQVSSFNAQLLNANQSIAPSYAAWLTGNQALDQELSTMKISRLEDTTKLAYNTLLDGISTNLMPVIEKGYRLELTKVQDKPTRALPLLKGYLMLKDPAKRDMAYLRKKTELVVSSLTGSNEMTAQTMAYLDAYFRTQFAPVNINMDLVRATRRQLLSNSNVDLVYAQMLDQADEIDLGTLDIERAVGFDFTNVFNDSVDENRLTISKVYTSTGFTTFYRPRVDLMSKNVIADNWVLGLSDNVIPTQQEQDSFKEQVRKKYTDDYISYWRNALSELKVKRYNNIGDLTNAIDLISGPSSPMTTVLKQVYTNTQFSPTGDKTELLKNKAPLLNDAVEAAKGAAEDVVQPDYLLMSRVEQAFRLLNQLQVNETPNSPTPWEETITALSQVRSYVKDIADSPDAQMAALAATRKRMNSSEADPLIRLKQIAQKSPEPVRSWLMDIVNQTWSVMITEASQGIQTKWYSEVYSKFKEIGLNKYPFDLTATDEISLEDFELLFAQGGIMDTFIQQNFAPFYDTNLWTPKRVDGEVMPLSPELLVQLKNYNVIRDTLINKSTNRFYIPFSAKVLDLDSSAIRATIKVADTSINYYQGPSLVKELQWPPQSGDFSVSITIQDVTDEGKQHVLSKNGQWAVYRLLGSSTLTNSHNGSFVSDIKVSGRDLRMRITPLTQKNPFTLPELYNFTLPESI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9932 | - | - |
Protein sequence: 1131 a.a.
Nucleotide sequence: 3393 bp