Detailed information of component protein


Summary

Component ID T6CP015955
Component protein type TssM
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (1131 a.a.); Nucleotide sequence (3393 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08880
Coordinate (Strand) 36549..39941 (-)
NCBI ID 750620620
RefSeq NZ_BATJ01000006
Uniprot ID UPI000593B968
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.8e-46 154..408
IcmF-related PF06761.14 2.1e-42 497..756
IcmF_C PF06744.14 2.1e-17 1005..1108
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-11 MFKKNLVRNPV
Transmembrane helix 12-34 FLSTLLALIGVAITLTVYFVWFA
Outside 35-38 ESSA
Transmembrane helix 39-61 WYLYGPLAAILVIYATFNTILWV
Inside 62-401 KKRRQQKSQQLETEEETLSMVLRPLLQRASKKSIYLILGNKSSGKAQFLHTSNAIKPMDRPNTIKNDFFEWYESDSAIYIKPDRRLVFQEVSSADSALWHTLVNEVIRLRPRKPFSGCLFFIDFEFLIVHEDEQVDYTLTALLQRLEYIGQETAAAIPLYLVMSKLDKLDGFKEYVHFSPLKTAIEYLSIPLKDAKGAMIDYFNDSFTNLVKVMESNALDSSSHSNNVDEKKAILAFPKQFELCQGEVRNVVERLNSLNHGSYCLDIREVFFSSNLQGGRKYNLLAKSCSNYFNLPIIASEHSHLSETPYFTRFLVESQILPEADFAGENKTYLRRIQRH
Transmembrane helix 402-424 SYLSMAASVAIILGGGYLLFQVL
Outside 425-1130 DSNLNVMNQMIGVEGTEESDDQVSSFNAQLLNANQSIAPSYAAWLTGNQALDQELSTMKISRLEDTTKLAYNTLLDGISTNLMPVIEKGYRLELTKVQDKPTRALPLLKGYLMLKDPAKRDMAYLRKKTELVVSSLTGSNEMTAQTMAYLDAYFRTQFAPVNINMDLVRATRRQLLSNSNVDLVYAQMLDQADEIDLGTLDIERAVGFDFTNVFNDSVDENRLTISKVYTSTGFTTFYRPRVDLMSKNVIADNWVLGLSDNVIPTQQEQDSFKEQVRKKYTDDYISYWRNALSELKVKRYNNIGDLTNAIDLISGPSSPMTTVLKQVYTNTQFSPTGDKTELLKNKAPLLNDAVEAAKGAAEDVVQPDYLLMSRVEQAFRLLNQLQVNETPNSPTPWEETITALSQVRSYVKDIADSPDAQMAALAATRKRMNSSEADPLIRLKQIAQKSPEPVRSWLMDIVNQTWSVMITEASQGIQTKWYSEVYSKFKEIGLNKYPFDLTATDEISLEDFELLFAQGGIMDTFIQQNFAPFYDTNLWTPKRVDGEVMPLSPELLVQLKNYNVIRDTLINKSTNRFYIPFSAKVLDLDSSAIRATIKVADTSINYYQGPSLVKELQWPPQSGDFSVSITIQDVTDEGKQHVLSKNGQWAVYRLLGSSTLTNSHNGSFVSDIKVSGRDLRMRITPLTQKNPFTLPELYNFTLPESI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9932 - -


  Protein sequence: 1131 a.a.    

>T6CP015955 NZ_BATJ01000006:c39941-36549 [Vibrio proteolyticus NBRC 13287] [TssM]
MFKKNLVRNPVFLSTLLALIGVAITLTVYFVWFAESSAWYLYGPLAAILVIYATFNTILWVKKRRQQKSQQLETEEETLS
MVLRPLLQRASKKSIYLILGNKSSGKAQFLHTSNAIKPMDRPNTIKNDFFEWYESDSAIYIKPDRRLVFQEVSSADSALW
HTLVNEVIRLRPRKPFSGCLFFIDFEFLIVHEDEQVDYTLTALLQRLEYIGQETAAAIPLYLVMSKLDKLDGFKEYVHFS
PLKTAIEYLSIPLKDAKGAMIDYFNDSFTNLVKVMESNALDSSSHSNNVDEKKAILAFPKQFELCQGEVRNVVERLNSLN
HGSYCLDIREVFFSSNLQGGRKYNLLAKSCSNYFNLPIIASEHSHLSETPYFTRFLVESQILPEADFAGENKTYLRRIQR
HSYLSMAASVAIILGGGYLLFQVLDSNLNVMNQMIGVEGTEESDDQVSSFNAQLLNANQSIAPSYAAWLTGNQALDQELS
TMKISRLEDTTKLAYNTLLDGISTNLMPVIEKGYRLELTKVQDKPTRALPLLKGYLMLKDPAKRDMAYLRKKTELVVSSL
TGSNEMTAQTMAYLDAYFRTQFAPVNINMDLVRATRRQLLSNSNVDLVYAQMLDQADEIDLGTLDIERAVGFDFTNVFND
SVDENRLTISKVYTSTGFTTFYRPRVDLMSKNVIADNWVLGLSDNVIPTQQEQDSFKEQVRKKYTDDYISYWRNALSELK
VKRYNNIGDLTNAIDLISGPSSPMTTVLKQVYTNTQFSPTGDKTELLKNKAPLLNDAVEAAKGAAEDVVQPDYLLMSRVE
QAFRLLNQLQVNETPNSPTPWEETITALSQVRSYVKDIADSPDAQMAALAATRKRMNSSEADPLIRLKQIAQKSPEPVRS
WLMDIVNQTWSVMITEASQGIQTKWYSEVYSKFKEIGLNKYPFDLTATDEISLEDFELLFAQGGIMDTFIQQNFAPFYDT
NLWTPKRVDGEVMPLSPELLVQLKNYNVIRDTLINKSTNRFYIPFSAKVLDLDSSAIRATIKVADTSINYYQGPSLVKEL
QWPPQSGDFSVSITIQDVTDEGKQHVLSKNGQWAVYRLLGSSTLTNSHNGSFVSDIKVSGRDLRMRITPLTQKNPFTLPE
LYNFTLPESI*

  Nucleotide sequence: 3393 bp    

>T6CP015955 NZ_BATJ01000006:c39941-36549 [Vibrio proteolyticus NBRC 13287] [TssM]
ATGTTCAAGAAGAATTTGGTTAGGAACCCAGTGTTTTTATCAACACTGTTGGCATTGATTGGGGTAGCGATCACCCTGAC
GGTGTATTTTGTCTGGTTTGCAGAAAGCAGTGCCTGGTACTTATACGGACCTTTGGCTGCGATTTTGGTCATCTACGCGA
CTTTCAACACAATTCTGTGGGTGAAGAAGCGCCGTCAACAAAAATCACAACAACTGGAAACCGAAGAAGAAACGCTGTCG
ATGGTGTTGCGTCCGTTGCTTCAGCGGGCCAGTAAAAAGTCGATTTACCTGATTTTGGGTAATAAGTCTTCCGGTAAAGC
CCAGTTTCTGCACACTTCTAACGCGATAAAGCCGATGGACCGCCCCAACACCATCAAGAATGATTTCTTTGAATGGTACG
AGTCCGACTCTGCTATCTACATCAAACCAGACCGCCGTCTGGTTTTTCAGGAAGTATCCAGTGCGGATTCCGCGCTGTGG
CATACATTGGTCAATGAAGTCATCCGACTCCGTCCACGTAAACCGTTCAGTGGCTGTCTGTTTTTCATCGACTTTGAGTT
TCTGATTGTCCATGAAGACGAACAGGTCGACTACACCCTGACCGCACTGTTACAACGTTTGGAATACATTGGTCAGGAAA
CGGCGGCCGCCATTCCTCTTTATCTGGTGATGTCGAAACTGGATAAACTGGATGGATTTAAAGAATATGTGCACTTCAGT
CCACTGAAAACAGCGATCGAGTACCTGAGCATTCCATTGAAAGATGCAAAAGGTGCGATGATCGACTACTTCAATGACAG
TTTCACCAATCTGGTCAAAGTGATGGAGTCCAACGCACTGGATTCGTCCTCTCACTCCAACAATGTGGATGAGAAAAAAG
CCATTCTGGCCTTTCCTAAGCAATTCGAGTTGTGTCAAGGAGAAGTACGTAATGTGGTCGAGCGTCTGAATAGTCTCAAT
CACGGCAGTTACTGTCTGGATATTCGAGAGGTGTTCTTCAGCTCCAACTTACAAGGTGGTAGAAAATACAACTTGCTGGC
CAAAAGTTGCAGTAACTATTTCAACCTGCCAATTATCGCGTCGGAGCACTCTCACCTAAGTGAAACTCCGTATTTCACCC
GCTTCCTGGTTGAATCGCAGATTCTGCCAGAAGCCGATTTCGCCGGCGAGAACAAGACCTACTTGCGTCGTATCCAACGT
CACAGCTACCTGTCAATGGCTGCGAGTGTCGCGATCATTCTTGGCGGCGGCTATCTGTTGTTCCAGGTGCTGGACAGTAA
CCTGAATGTGATGAACCAGATGATTGGGGTAGAAGGCACAGAAGAAAGCGACGATCAAGTATCCTCATTCAATGCTCAAT
TGCTGAATGCCAACCAGTCTATCGCTCCGTCTTACGCGGCGTGGCTAACTGGTAACCAGGCGTTGGACCAAGAGCTATCG
ACGATGAAGATCAGCCGTTTGGAAGACACGACTAAACTGGCCTACAACACTCTGCTGGATGGTATCTCAACGAACCTGAT
GCCTGTCATTGAAAAAGGCTACCGTCTTGAGTTAACCAAAGTACAAGACAAACCTACTCGTGCTCTGCCGCTGCTCAAAG
GCTACCTGATGCTGAAAGATCCAGCCAAGCGCGACATGGCGTATCTGCGTAAGAAAACCGAGTTAGTGGTCAGCTCACTG
ACGGGCAGCAACGAGATGACGGCACAAACCATGGCGTATCTTGATGCCTACTTCCGAACGCAGTTTGCCCCGGTTAATAT
CAATATGGATCTGGTACGGGCGACACGTCGACAACTGCTGTCCAACTCGAACGTCGATCTCGTTTACGCACAGATGCTGG
ATCAGGCAGATGAAATCGATCTGGGTACGTTGGATATCGAACGCGCCGTTGGCTTCGATTTTACTAACGTCTTCAACGAC
AGTGTCGACGAAAACCGTCTGACCATCAGCAAAGTGTACACCTCCACCGGTTTCACCACGTTCTATCGCCCACGTGTGGA
TCTGATGTCGAAGAACGTCATCGCCGACAACTGGGTGCTGGGCTTGTCAGATAACGTCATCCCGACCCAGCAGGAACAAG
ACAGCTTCAAAGAGCAGGTACGTAAGAAATACACCGATGACTACATCAGTTATTGGCGAAATGCGCTCAGCGAGCTGAAA
GTGAAGCGATACAACAACATTGGTGATTTAACCAATGCCATCGATTTGATTTCGGGTCCGTCATCACCGATGACTACCGT
TCTGAAGCAGGTGTATACCAATACACAATTCTCTCCTACTGGTGATAAGACCGAACTGCTGAAAAACAAAGCGCCTCTGT
TGAATGATGCTGTGGAAGCGGCAAAAGGTGCGGCAGAAGACGTTGTCCAGCCAGATTACCTGCTGATGTCGCGTGTAGAA
CAAGCGTTCCGCCTGCTGAACCAACTGCAAGTTAACGAGACGCCGAACTCCCCTACCCCTTGGGAAGAGACCATTACCGC
TCTGAGCCAGGTGCGCTCTTACGTTAAAGATATTGCCGACTCACCGGATGCCCAAATGGCCGCCCTGGCCGCAACGCGCA
AACGGATGAACAGCTCGGAAGCCGATCCGCTGATCCGTCTCAAACAGATCGCTCAAAAGTCACCAGAACCGGTGCGTTCT
TGGCTGATGGACATCGTCAACCAAACTTGGTCTGTTATGATTACCGAAGCATCTCAGGGGATTCAAACCAAGTGGTATAG
TGAGGTTTACAGCAAATTTAAAGAGATTGGCCTCAACAAGTATCCGTTCGATCTCACCGCAACCGACGAGATCTCTCTTG
AAGACTTTGAGCTGCTGTTCGCTCAGGGTGGCATCATGGATACCTTTATCCAGCAGAACTTCGCTCCGTTCTACGACACC
AACCTGTGGACACCGAAACGTGTCGACGGTGAGGTCATGCCATTATCGCCAGAACTGCTGGTTCAGTTGAAAAACTACAA
CGTGATTCGCGATACCCTGATCAATAAGAGTACCAACCGCTTCTATATTCCGTTCAGTGCTAAAGTTCTGGATCTGGACT
CCAGTGCTATACGCGCCACAATTAAGGTTGCCGACACCAGCATTAACTATTATCAGGGGCCAAGCTTGGTGAAAGAGCTG
CAATGGCCACCACAAAGCGGCGATTTCAGCGTCAGCATCACCATCCAGGATGTGACGGATGAGGGTAAGCAGCACGTATT
GAGCAAAAATGGTCAATGGGCGGTGTATCGTCTTCTGGGCAGCTCGACATTAACAAATTCCCACAATGGTAGCTTCGTCA
GTGATATTAAAGTGTCTGGCCGCGATCTCCGTATGCGCATTACTCCGCTCACGCAGAAGAATCCGTTTACGTTGCCTGAG
CTGTACAACTTTACGTTACCCGAATCTATCTAA