Detailed information of component protein


Summary

Component ID T6CP015954
Component protein type TssG
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08870
Coordinate (Strand) 35015..36013 (+)
NCBI ID 545468483
RefSeq NZ_BATJ01000006
Uniprot ID U2ZZZ8_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 4.9e-89 9..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MINQISDKAYEFSFFQAVSLLEKHYKSDSSVDFSGVGENKYFHQERIRFSVSASLAFPKSDMDFVTHMDMAGEAYTRVEVNFLGLHGSSSPLPSSYTEKLAGREEEDNPVKQFFDFFHNRYVSMVYRVWKKYRYHIQYESGAQDPFSSRMLHLLGLSSVMQEAEAADLDRAKLLSYVNQLSTRTRSPKLISGIVAHYFSLPNVYIEEWVFRRIEIHPSQRNQLNQMNCQLGQDFHLGQSMPDLVGKFNLCIDEIDFSTYQAFLPGKTQHETLVGLIRFILRDPMAWDLKMRVKLDTVPQNSLGQGEGNVLGQTAWLGIPTEDDTQIRLIGSV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9908 - -


  Protein sequence: 333 a.a.    

>T6CP015954 NZ_BATJ01000006:35015-36013 [Vibrio proteolyticus NBRC 13287] [TssG]
MINQISDKAYEFSFFQAVSLLEKHYKSDSSVDFSGVGENKYFHQERIRFSVSASLAFPKSDMDFVTHMDMAGEAYTRVEV
NFLGLHGSSSPLPSSYTEKLAGREEEDNPVKQFFDFFHNRYVSMVYRVWKKYRYHIQYESGAQDPFSSRMLHLLGLSSVM
QEAEAADLDRAKLLSYVNQLSTRTRSPKLISGIVAHYFSLPNVYIEEWVFRRIEIHPSQRNQLNQMNCQLGQDFHLGQSM
PDLVGKFNLCIDEIDFSTYQAFLPGKTQHETLVGLIRFILRDPMAWDLKMRVKLDTVPQNSLGQGEGNVLGQTAWLGIPT
EDDTQIRLIGSV*

  Nucleotide sequence: 999 bp    

>T6CP015954 NZ_BATJ01000006:35015-36013 [Vibrio proteolyticus NBRC 13287] [TssG]
ATGATCAATCAGATTTCAGATAAAGCTTACGAGTTCAGCTTTTTCCAGGCTGTATCGCTACTGGAAAAACACTATAAATC
TGACAGCAGTGTCGACTTTAGCGGAGTCGGTGAAAACAAGTACTTTCATCAGGAACGCATTCGCTTTAGCGTGTCTGCCA
GCTTGGCTTTTCCCAAGAGTGATATGGACTTTGTCACTCATATGGATATGGCTGGCGAAGCGTATACCCGGGTCGAGGTC
AACTTTCTAGGTCTCCACGGCTCTAGCTCACCTCTGCCGTCCTCGTACACGGAAAAGCTGGCAGGCAGGGAAGAAGAAGA
TAACCCGGTTAAGCAGTTTTTTGACTTCTTTCATAACCGCTATGTCTCGATGGTTTATCGGGTATGGAAAAAGTACCGTT
ACCACATTCAGTATGAGAGTGGCGCTCAGGATCCGTTTTCCAGCCGTATGCTGCATTTACTTGGCCTGTCCAGTGTCATG
CAGGAAGCAGAAGCGGCGGATTTGGACAGAGCGAAGCTGTTGTCCTATGTTAACCAGTTATCCACCCGGACCCGTTCCCC
TAAACTGATTTCGGGTATTGTTGCGCACTATTTCTCACTGCCTAATGTGTACATTGAGGAGTGGGTGTTCCGCCGGATCG
AGATACACCCTAGCCAGCGCAATCAGCTTAATCAGATGAATTGTCAGCTCGGACAGGACTTTCACTTGGGGCAGAGCATG
CCGGACCTGGTGGGTAAATTTAATCTGTGTATCGACGAAATTGATTTCTCCACCTATCAGGCGTTTTTGCCAGGTAAGAC
GCAGCATGAGACGCTGGTGGGCCTGATTCGCTTCATCTTAAGAGACCCGATGGCTTGGGATTTAAAAATGCGAGTTAAGT
TAGATACCGTGCCTCAGAACAGTCTTGGTCAGGGGGAAGGCAATGTGCTCGGACAGACGGCGTGGCTGGGTATTCCAACG
GAAGATGATACTCAAATCCGGCTTATCGGTAGTGTATAA