Detailed information of component protein


Summary

Component ID T6CP015953
Component protein type TssF
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (583 a.a.); Nucleotide sequence (1749 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08865
Coordinate (Strand) 33270..35018 (+)
NCBI ID 545468482
RefSeq NZ_BATJ01000006
Uniprot ID U3BB33_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6.7e-159 5..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-582 VSSSKYFQDELTYLREAGSEFAKYHPKLTNFLSEGTYDPDVERLMEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMRSVPSMCITELSPHVGSVTERTVIARGAEMASEQVESTQCLFRSCYDVDLYPVRLTGIEQANSRTSSTVDVSLSTEHGLELSRLKMDSLRFHLHGEVHITRTLYLWLFRYLDYVELDVGGGYKHRLRADQIKPVGFAENEAILPYSKNSFSGYRLLQEYFSLPEKFMFFDVTGLEWLKGIPQRSTLKFSFVFKRALPSEVVLKDKHFKLHCTPTVNLFSIDADPIRLEHRRNEYKVRPQTNSQEHFEVYSIEEVQSWSKSERRRKKLIEFESFEHQINQRDKREFYKTKVGERINGRGLERYISFHTHDSGIADLGTETVLMKLVCSNADLAERLSVGDITYTTHKSPTYATFRNITKPTQSVSPQINGELQWQLIANMSLNYLSLANIDVLKVLLSTYDFHSRVDRQAHRASIHRLDGIRSSEMEPIDRVFRGVAVRGTQFNLIVNSSYFVNEGDMFLLASVLNEFIRLYSSLNSFTELEVFDEKTGEVYHWPSLPGKQTVL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9942 - -


  Protein sequence: 583 a.a.    

>T6CP015953 NZ_BATJ01000006:33270-35018 [Vibrio proteolyticus NBRC 13287] [TssF]
VSSSKYFQDELTYLREAGSEFAKYHPKLTNFLSEGTYDPDVERLMEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYMR
SVPSMCITELSPHVGSVTERTVIARGAEMASEQVESTQCLFRSCYDVDLYPVRLTGIEQANSRTSSTVDVSLSTEHGLEL
SRLKMDSLRFHLHGEVHITRTLYLWLFRYLDYVELDVGGGYKHRLRADQIKPVGFAENEAILPYSKNSFSGYRLLQEYFS
LPEKFMFFDVTGLEWLKGIPQRSTLKFSFVFKRALPSEVVLKDKHFKLHCTPTVNLFSIDADPIRLEHRRNEYKVRPQTN
SQEHFEVYSIEEVQSWSKSERRRKKLIEFESFEHQINQRDKREFYKTKVGERINGRGLERYISFHTHDSGIADLGTETVL
MKLVCSNADLAERLSVGDITYTTHKSPTYATFRNITKPTQSVSPQINGELQWQLIANMSLNYLSLANIDVLKVLLSTYDF
HSRVDRQAHRASIHRLDGIRSSEMEPIDRVFRGVAVRGTQFNLIVNSSYFVNEGDMFLLASVLNEFIRLYSSLNSFTELE
VFDEKTGEVYHWPSLPGKQTVL*

  Nucleotide sequence: 1749 bp    

>T6CP015953 NZ_BATJ01000006:33270-35018 [Vibrio proteolyticus NBRC 13287] [TssF]
GTGAGCAGCAGTAAATATTTTCAGGATGAGCTGACCTACCTGCGTGAAGCAGGCAGTGAGTTTGCCAAATACCATCCCAA
GCTAACCAACTTCCTATCAGAAGGAACCTACGATCCAGATGTTGAGCGTCTGATGGAAGGCTTCGCGTTCCTGACCGGAC
GCATTCGGGAGAAAATCGACGATGAGCTACCGGAGCTGACGCAGTCGCTGATGACGCTGCTCTGGCCGCATTATATGCGC
TCTGTGCCGTCGATGTGCATTACGGAACTGTCACCCCATGTCGGGAGCGTGACTGAGCGGACGGTGATTGCTCGTGGTGC
TGAAATGGCCAGCGAGCAGGTTGAAAGCACGCAGTGCCTGTTCCGGTCGTGTTATGATGTCGACTTATACCCGGTCCGTC
TGACCGGAATTGAGCAGGCGAATAGCCGGACCAGCTCAACTGTGGATGTGTCTCTGTCGACAGAGCATGGCCTGGAGCTG
TCTCGTCTGAAAATGGACTCACTGCGCTTCCATTTGCACGGGGAAGTGCATATCACCCGTACGCTGTATCTCTGGCTGTT
CCGGTATTTGGATTATGTTGAACTGGATGTCGGTGGTGGTTACAAGCATCGTCTGCGTGCAGATCAGATCAAGCCGGTTG
GATTTGCTGAAAATGAAGCGATCTTGCCGTACAGCAAAAATTCCTTTTCTGGCTACCGGTTGCTGCAAGAATACTTCTCT
CTGCCTGAAAAGTTCATGTTCTTTGATGTGACAGGTCTGGAATGGTTAAAAGGCATTCCTCAACGATCGACACTGAAGTT
TTCTTTTGTATTTAAACGTGCGCTGCCATCGGAAGTTGTGCTGAAAGATAAGCACTTCAAACTGCACTGTACACCTACGG
TCAATTTGTTCTCTATTGATGCGGATCCGATTCGCCTTGAGCATCGTCGCAACGAATACAAAGTGCGTCCACAGACCAAC
AGTCAGGAGCACTTCGAAGTTTATTCGATTGAAGAGGTTCAGAGCTGGAGTAAAAGTGAGCGTCGGCGCAAGAAACTGAT
CGAATTTGAATCGTTTGAGCATCAGATCAATCAGCGTGACAAGCGTGAGTTCTACAAAACTAAGGTGGGTGAGCGCATCA
ACGGCCGTGGTCTGGAGCGGTATATTTCGTTCCACACACACGACAGCGGCATCGCTGATCTGGGCACAGAAACCGTTCTC
ATGAAATTGGTGTGCAGCAACGCTGACCTCGCTGAGCGACTGTCAGTCGGGGACATCACATACACCACCCACAAGTCGCC
AACCTATGCTACGTTTCGCAATATCACTAAACCGACCCAGTCGGTCAGCCCGCAGATCAACGGTGAATTACAGTGGCAGT
TGATCGCTAATATGTCACTCAACTACTTGTCACTGGCCAATATCGATGTACTGAAAGTTCTGTTATCGACGTATGATTTT
CATTCGCGTGTTGACCGTCAGGCTCACCGTGCGTCGATTCACCGTCTTGATGGGATACGCTCGTCGGAGATGGAGCCGAT
TGATCGTGTATTCCGTGGTGTTGCTGTGCGTGGTACTCAGTTTAATCTGATAGTGAACTCCAGCTACTTTGTGAACGAAG
GTGACATGTTTCTGCTGGCCAGCGTGTTGAATGAGTTTATCCGTCTCTATTCGAGTCTCAACTCGTTCACGGAGCTGGAA
GTCTTTGACGAGAAAACCGGTGAAGTCTACCACTGGCCTAGTCTCCCTGGTAAACAGACAGTGTTATGA