Detailed information of component protein
Summary
| Component ID | T6CP015952 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00945  (Type i1) |
| Strain | Vibrio proteolyticus NBRC 13287 |
| Replicon | chromosome II |
| Sequence | Protein sequence (137 a.a.); Nucleotide sequence (411 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VPR01S_RS08860 |
| Coordinate (Strand) | 32841..33251 (+) |
| NCBI ID | 545468481 |
| RefSeq | NZ_BATJ01000006 |
| Uniprot ID | U3BK52_VIBPR |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 3.2e-16 | 28..115 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-136 | MEKGYRLLERIELGEPKNCYEKVVSHQHLVESIHIHLADLLNTHAGNAMIDNDYGLPDFNDVLSTNTNLVRHIQQNIRTTIEKFEPRLKGIEVFHRDDFHNPLQLSFGISGEVTHNGGKVPMSINVFMGVDGQFNV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9955 | - | - |
Protein sequence: 137 a.a.
>T6CP015952 NZ_BATJ01000006:32841-33251 [Vibrio proteolyticus NBRC 13287] [TssE]
MEKGYRLLERIELGEPKNCYEKVVSHQHLVESIHIHLADLLNTHAGNAMIDNDYGLPDFNDVLSTNTNLVRHIQQNIRTT
IEKFEPRLKGIEVFHRDDFHNPLQLSFGISGEVTHNGGKVPMSINVFMGVDGQFNV*
MEKGYRLLERIELGEPKNCYEKVVSHQHLVESIHIHLADLLNTHAGNAMIDNDYGLPDFNDVLSTNTNLVRHIQQNIRTT
IEKFEPRLKGIEVFHRDDFHNPLQLSFGISGEVTHNGGKVPMSINVFMGVDGQFNV*
Nucleotide sequence: 411 bp
>T6CP015952 NZ_BATJ01000006:32841-33251 [Vibrio proteolyticus NBRC 13287] [TssE]
ATGGAAAAAGGCTATCGTCTTCTGGAGCGTATCGAGCTCGGAGAACCGAAAAACTGCTACGAAAAGGTAGTATCACATCA
ACATTTGGTTGAATCCATTCATATACACCTCGCGGACTTACTGAATACACATGCGGGGAATGCAATGATAGACAATGACT
ACGGTCTGCCGGATTTCAACGATGTGCTGTCCACCAACACCAATCTGGTGCGCCATATTCAGCAGAATATCCGCACGACG
ATTGAAAAGTTCGAACCACGATTAAAAGGCATCGAAGTGTTTCACCGGGATGATTTTCACAACCCGTTGCAACTCAGCTT
TGGCATCAGTGGTGAAGTGACGCACAACGGCGGCAAAGTGCCTATGTCTATCAATGTGTTCATGGGTGTCGACGGACAAT
TTAACGTTTAG
ATGGAAAAAGGCTATCGTCTTCTGGAGCGTATCGAGCTCGGAGAACCGAAAAACTGCTACGAAAAGGTAGTATCACATCA
ACATTTGGTTGAATCCATTCATATACACCTCGCGGACTTACTGAATACACATGCGGGGAATGCAATGATAGACAATGACT
ACGGTCTGCCGGATTTCAACGATGTGCTGTCCACCAACACCAATCTGGTGCGCCATATTCAGCAGAATATCCGCACGACG
ATTGAAAAGTTCGAACCACGATTAAAAGGCATCGAAGTGTTTCACCGGGATGATTTTCACAACCCGTTGCAACTCAGCTT
TGGCATCAGTGGTGAAGTGACGCACAACGGCGGCAAAGTGCCTATGTCTATCAATGTGTTCATGGGTGTCGACGGACAAT
TTAACGTTTAG