Detailed information of component protein


Summary

Component ID T6CP015951
Component protein type TssC
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08855
Coordinate (Strand) 31299..32777 (+)
NCBI ID 545468480
RefSeq NZ_BATJ01000006
Uniprot ID U3A0X7_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 9.6e-124 68..365
VipB_2 PF18945.2 2.9e-45 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MTAEAQAPEQEAALAESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSNSASEKVDQSLVDLMIAEIDQKLSTQVDAILHNEEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVICDYQLSAATPDIKLMEYMANVGAMSHAPFITSASSKFFGLDSYEELPNLKDLKAVFEGPQYAKWRGLREHEDARYLGLCTSRFMLRNPYSVEDNPIKAFDYNEMVTDNHDHFLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGAVFDLPVYNYESMGQIETKIPTEILVSDRREFELAEEGFVALTMRKGSDNAAFFSANSIQKPKVFPNTPEGKQAEMNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSDVEGDPGWYRVSMSVRPHFKYMGASFDLSLVGKLDQN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -


  Protein sequence: 493 a.a.    

>T6CP015951 NZ_BATJ01000006:31299-32777 [Vibrio proteolyticus NBRC 13287] [TssC]
MTAEAQAPEQEAALAESGSLLDSILNETRLKPSDEGFDVAKRGVEAFIGELLSNSASEKVDQSLVDLMIAEIDQKLSTQV
DAILHNEEVQAIESTWRGLKYLVDHTDFRENIQIELISAKKDEVLDDFEDAPEVVKSGLYKQIYTREYGQFGGKPVGAVI
CDYQLSAATPDIKLMEYMANVGAMSHAPFITSASSKFFGLDSYEELPNLKDLKAVFEGPQYAKWRGLREHEDARYLGLCT
SRFMLRNPYSVEDNPIKAFDYNEMVTDNHDHFLWGNSAYAMASKISESFAKYRWCPNIIGPQSGGAVFDLPVYNYESMGQ
IETKIPTEILVSDRREFELAEEGFVALTMRKGSDNAAFFSANSIQKPKVFPNTPEGKQAEMNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERSDLEIELNKWIRQYVSDQENPPAEVRGRRPLRAAKVEVSDVEGDPGWYRVSMSVRPHFKYMGAS
FDLSLVGKLDQN*

  Nucleotide sequence: 1479 bp    

>T6CP015951 NZ_BATJ01000006:31299-32777 [Vibrio proteolyticus NBRC 13287] [TssC]
ATGACGGCAGAAGCTCAAGCTCCAGAACAAGAAGCAGCCCTTGCGGAATCAGGTTCACTTCTGGATAGCATTCTAAACGA
AACGCGCCTTAAGCCTAGCGATGAAGGTTTTGATGTTGCTAAGCGCGGTGTTGAAGCGTTTATCGGCGAACTACTAAGCA
ACAGTGCATCTGAAAAAGTTGACCAGTCTCTGGTTGACCTGATGATTGCTGAAATCGATCAAAAATTGTCTACGCAAGTT
GATGCAATCCTGCACAATGAAGAAGTTCAGGCAATCGAATCAACTTGGCGCGGTCTGAAGTATCTGGTGGATCACACTGA
CTTCCGCGAAAATATTCAGATCGAACTGATTTCTGCGAAGAAAGACGAAGTTCTGGACGATTTCGAAGACGCTCCAGAAG
TGGTTAAGTCTGGTCTGTACAAGCAGATCTACACTCGTGAATACGGTCAATTCGGTGGTAAACCAGTTGGCGCGGTGATC
TGTGATTACCAGCTTTCTGCTGCTACACCAGACATCAAACTGATGGAATACATGGCGAACGTAGGTGCGATGTCTCACGC
TCCGTTCATCACGTCTGCTTCATCGAAGTTTTTCGGTCTGGACAGCTACGAAGAGCTGCCTAACCTGAAAGATCTGAAAG
CGGTATTCGAAGGTCCTCAGTACGCTAAATGGCGTGGTCTGCGTGAACACGAAGATGCTCGTTACCTGGGCCTGTGTACT
TCTCGTTTTATGCTACGTAATCCGTACTCAGTTGAAGACAACCCGATCAAGGCGTTTGACTACAACGAGATGGTGACTGA
CAACCACGACCACTTCCTGTGGGGTAACTCTGCGTACGCGATGGCGTCAAAGATCAGTGAATCGTTCGCGAAATACCGCT
GGTGTCCGAACATCATCGGTCCTCAGAGCGGCGGTGCGGTATTTGACCTGCCAGTATACAACTACGAGTCAATGGGTCAG
ATCGAAACTAAGATCCCAACAGAGATCCTGGTTTCAGACCGTCGTGAGTTTGAACTGGCAGAAGAGGGTTTTGTTGCTCT
GACCATGCGTAAGGGTTCAGACAACGCAGCGTTCTTCTCTGCGAACTCTATCCAGAAGCCAAAAGTGTTCCCGAACACGC
CAGAAGGCAAACAGGCTGAAATGAACTACAAGCTGGGTACTCAGCTGCCATACATGTTCATTATCAACCGCCTGGCACAC
TACATCAAAGTTCTGCAACGTGAGCAGATCGGTTCTTGGAAAGAGCGTTCTGACCTGGAAATCGAACTGAACAAGTGGAT
CCGTCAGTATGTTTCTGATCAGGAAAACCCGCCAGCAGAAGTTCGTGGTCGTCGTCCACTGCGCGCTGCGAAAGTAGAAG
TGTCTGATGTTGAAGGCGATCCAGGTTGGTACCGTGTATCAATGTCTGTACGTCCTCACTTCAAGTACATGGGCGCAAGC
TTCGACCTGTCACTGGTTGGTAAGCTGGATCAAAACTAA