Detailed information of component protein
Summary
| Component ID | T6CP015950 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00945  (Type i1) |
| Strain | Vibrio proteolyticus NBRC 13287 |
| Replicon | chromosome II |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VPR01S_RS08850 |
| Coordinate (Strand) | 30780..31289 (+) |
| NCBI ID | WP_021704976.1 |
| RefSeq | NZ_BATJ01000006 |
| Uniprot ID | U2ZH37_VIBPR, A0A6L9FNT4_9VIBR |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2.6e-58 | 6..157 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-169 | MSRDGSVAPKERINIRYVPATGDAQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGYSPNVKVNVDNRLSDEEGAQLAVDLTFKDMKDFSPETIAKNVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARKKLLEELSLGGNQDADKAE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9846 | - | - |
Protein sequence: 170 a.a.
>T6CP015950 NZ_BATJ01000006:30780-31289 [Vibrio proteolyticus NBRC 13287] [TssB]
MSRDGSVAPKERINIRYVPATGDAQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGYSPNVKVNVDNR
LSDEEGAQLAVDLTFKDMKDFSPETIAKNVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARKKLLEELSLG
GNQDADKAE*
MSRDGSVAPKERINIRYVPATGDAQEDVELPLSMMVVGDFTARADETPIEERTPINIDKDNFNEVLEGYSPNVKVNVDNR
LSDEEGAQLAVDLTFKDMKDFSPETIAKNVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARKKLLEELSLG
GNQDADKAE*
Nucleotide sequence: 510 bp
>T6CP015950 NZ_BATJ01000006:30780-31289 [Vibrio proteolyticus NBRC 13287] [TssB]
ATGTCACGCGATGGCTCGGTAGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCGACTGGTGATGCGCAAGAAGA
CGTAGAACTGCCGCTGAGTATGATGGTTGTTGGTGACTTTACTGCACGTGCAGATGAGACACCAATCGAAGAACGTACGC
CTATCAACATCGACAAAGATAACTTCAACGAAGTTCTGGAAGGCTACTCGCCTAACGTGAAAGTAAACGTTGATAACCGT
CTGAGTGATGAAGAAGGTGCCCAACTGGCAGTCGATCTGACTTTCAAAGACATGAAAGACTTTTCACCTGAAACTATTGC
TAAGAACGTCCCAGAGCTGAACGGCTTGTTGGAACTGCGTGAAGCATTGGTTGCACTGAAAGGTCCACTAGGTAACGTTC
CTGCGTTCCGTAAGAAGATTGCAGCAGTACTTCAGGACGAAGAAGCACGCAAGAAACTACTAGAAGAGCTGAGTCTTGGT
GGAAACCAAGATGCGGATAAAGCAGAGTAA
ATGTCACGCGATGGCTCGGTAGCTCCTAAAGAGCGAATTAATATCCGTTATGTTCCAGCGACTGGTGATGCGCAAGAAGA
CGTAGAACTGCCGCTGAGTATGATGGTTGTTGGTGACTTTACTGCACGTGCAGATGAGACACCAATCGAAGAACGTACGC
CTATCAACATCGACAAAGATAACTTCAACGAAGTTCTGGAAGGCTACTCGCCTAACGTGAAAGTAAACGTTGATAACCGT
CTGAGTGATGAAGAAGGTGCCCAACTGGCAGTCGATCTGACTTTCAAAGACATGAAAGACTTTTCACCTGAAACTATTGC
TAAGAACGTCCCAGAGCTGAACGGCTTGTTGGAACTGCGTGAAGCATTGGTTGCACTGAAAGGTCCACTAGGTAACGTTC
CTGCGTTCCGTAAGAAGATTGCAGCAGTACTTCAGGACGAAGAAGCACGCAAGAAACTACTAGAAGAGCTGAGTCTTGGT
GGAAACCAAGATGCGGATAAAGCAGAGTAA