Detailed information of component protein


Summary

Component ID T6CP015949
Component protein type TssA
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (518 a.a.); Nucleotide sequence (1554 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08845
Coordinate (Strand) 29200..30753 (+)
NCBI ID 545468478
RefSeq NZ_BATJ01000006
Uniprot ID U2ZZZ4_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 5e-66 240..488
ImpA_N PF06812.14 6.6e-27 10..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-517 MELIAIDSLLAPISDASPCGDDARYEFSYEMMESEVKKFGSLFGETVDWNIVKTNAVEVLSHHSKDLKALCYLVRALVEEANVDGLEQGLTLLARSIESFGTGLYPSRKRGRDGAVEWLNHQIKLSQPTLEQEALSWEQLSRCNDLTEEVQRHYDNVFSDSEADFYEIRTSINALMQRAGSDVAPQTAPVAEAPAVTPVASEPERAPETAPVKTAPVAAPTPPPVKPQRKEVDVDTDFSSPTASKRTLKKVAETMLAAEPTVPLSYRIHRHLTWMDIDELPDHQNNVTPLSLAVSSDQQSEYRDKAKQESDIDTVKRLERTLTDAPFWLTGHYMVFQMLDNLELHEAAQAVKQETQKFAKSLPGLEALSFKNSVPFADEATLGWLSTSDSMSSGQQVVMPSIIIAEDDSLSMDDVTLENLGERVAEVARRLELDSSGRGQFMLHLQMVKAYHGVGLFSLCLPYLEKVWTVREEMDLASWEPHLSLQLDSLTERTLKELYPSKEQLPAKYQEWETIYN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9211 - -


  Protein sequence: 518 a.a.    

>T6CP015949 NZ_BATJ01000006:29200-30753 [Vibrio proteolyticus NBRC 13287] [TssA]
MELIAIDSLLAPISDASPCGDDARYEFSYEMMESEVKKFGSLFGETVDWNIVKTNAVEVLSHHSKDLKALCYLVRALVEE
ANVDGLEQGLTLLARSIESFGTGLYPSRKRGRDGAVEWLNHQIKLSQPTLEQEALSWEQLSRCNDLTEEVQRHYDNVFSD
SEADFYEIRTSINALMQRAGSDVAPQTAPVAEAPAVTPVASEPERAPETAPVKTAPVAAPTPPPVKPQRKEVDVDTDFSS
PTASKRTLKKVAETMLAAEPTVPLSYRIHRHLTWMDIDELPDHQNNVTPLSLAVSSDQQSEYRDKAKQESDIDTVKRLER
TLTDAPFWLTGHYMVFQMLDNLELHEAAQAVKQETQKFAKSLPGLEALSFKNSVPFADEATLGWLSTSDSMSSGQQVVMP
SIIIAEDDSLSMDDVTLENLGERVAEVARRLELDSSGRGQFMLHLQMVKAYHGVGLFSLCLPYLEKVWTVREEMDLASWE
PHLSLQLDSLTERTLKELYPSKEQLPAKYQEWETIYN*

  Nucleotide sequence: 1554 bp    

>T6CP015949 NZ_BATJ01000006:29200-30753 [Vibrio proteolyticus NBRC 13287] [TssA]
ATGGAATTGATTGCAATCGATAGCTTGTTGGCTCCGATCAGCGATGCTTCGCCATGTGGTGATGATGCACGTTACGAGTT
CAGCTATGAAATGATGGAGTCGGAAGTTAAGAAATTCGGCTCATTATTCGGGGAGACGGTCGACTGGAATATCGTTAAAA
CCAACGCTGTTGAAGTTCTCAGTCATCACAGTAAAGACCTTAAAGCGTTATGTTATCTGGTTCGTGCGCTGGTGGAAGAA
GCCAATGTGGATGGGCTAGAACAGGGCCTGACCCTGTTAGCGCGTTCGATTGAAAGCTTTGGCACTGGTCTCTACCCAAG
CCGTAAACGCGGTCGTGACGGTGCAGTAGAGTGGTTAAATCATCAGATCAAACTGAGCCAACCGACGCTCGAGCAAGAGG
CGTTAAGCTGGGAGCAACTTTCTCGTTGTAATGATTTAACGGAAGAAGTGCAGCGTCATTACGATAACGTCTTCAGTGAT
TCAGAAGCGGACTTCTACGAAATCCGTACCTCGATCAATGCATTGATGCAACGTGCGGGCTCTGACGTGGCACCGCAAAC
GGCGCCCGTCGCAGAAGCGCCCGCCGTGACTCCCGTCGCTTCTGAACCGGAACGTGCACCAGAGACGGCACCGGTTAAAA
CGGCGCCTGTTGCGGCACCGACTCCACCTCCGGTCAAACCGCAGCGCAAAGAAGTGGACGTCGATACCGACTTCTCTTCA
CCGACGGCTTCAAAACGTACGTTAAAGAAAGTGGCCGAAACGATGTTGGCGGCTGAGCCGACTGTGCCGCTGTCTTATCG
GATTCATCGCCACCTTACCTGGATGGACATTGATGAACTGCCGGATCATCAAAACAACGTCACGCCGTTGAGCCTGGCGG
TATCTTCTGATCAACAGTCGGAATACCGGGACAAAGCTAAACAGGAGAGTGATATTGATACCGTTAAGCGACTTGAGCGC
ACCCTAACAGATGCGCCGTTCTGGTTGACGGGTCATTACATGGTGTTCCAGATGCTCGACAATCTGGAACTTCATGAGGC
CGCTCAGGCGGTCAAACAAGAGACGCAAAAATTTGCTAAGTCTCTACCGGGCCTTGAAGCCCTTTCATTTAAAAATTCTG
TTCCATTCGCTGATGAAGCGACGCTTGGTTGGTTGTCTACAAGCGATAGCATGTCTTCTGGTCAACAAGTGGTGATGCCA
AGCATCATCATTGCAGAAGATGATTCATTGTCGATGGACGATGTCACCCTCGAGAATTTGGGGGAACGTGTGGCAGAGGT
TGCTCGTCGTCTGGAGCTTGATAGCTCAGGACGAGGGCAATTTATGTTGCATTTACAAATGGTAAAAGCCTACCACGGCG
TAGGATTATTTTCTCTTTGCCTGCCTTATCTGGAAAAGGTCTGGACAGTACGTGAGGAAATGGATCTTGCCAGCTGGGAA
CCACATTTGTCTTTGCAATTGGATTCTCTTACCGAGAGAACCCTCAAAGAGCTGTATCCATCTAAGGAGCAGTTACCTGC
AAAATATCAAGAGTGGGAAACAATTTATAACTAG