Detailed information of component protein


Summary

Component ID T6CP015948
Component protein type TssI
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (693 a.a.); Nucleotide sequence (2079 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08815
Coordinate (Strand) 21119..23197 (+)
NCBI ID 545468472
RefSeq NZ_BATJ01000006
Uniprot ID U3BB23_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.9e-78 26..331
Phage_base_V PF04717.14 9.2e-15 387..455
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-692 MVNDVEFKFEVLGTGHEFRVESFQVTEELSKPFHVSLSLLSLDADITFDALIRKPALLTLYGQGAGSARLFHGVVNEVRYLGQGRRFARYQVVLVPQFWFLTQRQDCRIFQHKAAPDIISEVLDDASVTDYRLELSGTYPPKEYVLQYRETDSHFVQRMLAEHGMWYYFEHTEANHTMVIVDSNDAIAELQSTPLNASYIGPIVYHSDAGGVADREHIFDLELINRVRTGHVTYTDYNYEQPKIPQEMASNGDLDQDLKLFDYPGRYGDPAQGQIRATEWMADHVVENQQIEASSNVMRLTAGYSFNIGEHPRASINRDFTMLAVTHHGHDPQVHEDEASGMPTSYHNQFVCIPRDIVFRAPKLPAPMVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWDRYANNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHYPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEIYIHAQKDMSTKVLNNRYRDIGQDEFLKVGRHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQDVTVTYNANETQYVKNNSSLEIGDNRTTKIGKNDDLDVGENSNLTVGASRSSDVGADDNQTVGGNLTVSVKGNTSYKADGATQIISGEKIVLKTGGSSLVMSSDGTIKLSGTSITIDGSAKVVVKGGNVAIN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9946 - -


  Protein sequence: 693 a.a.    

>T6CP015948 NZ_BATJ01000006:21119-23197 [Vibrio proteolyticus NBRC 13287] [TssI]
MVNDVEFKFEVLGTGHEFRVESFQVTEELSKPFHVSLSLLSLDADITFDALIRKPALLTLYGQGAGSARLFHGVVNEVRY
LGQGRRFARYQVVLVPQFWFLTQRQDCRIFQHKAAPDIISEVLDDASVTDYRLELSGTYPPKEYVLQYRETDSHFVQRML
AEHGMWYYFEHTEANHTMVIVDSNDAIAELQSTPLNASYIGPIVYHSDAGGVADREHIFDLELINRVRTGHVTYTDYNYE
QPKIPQEMASNGDLDQDLKLFDYPGRYGDPAQGQIRATEWMADHVVENQQIEASSNVMRLTAGYSFNIGEHPRASINRDF
TMLAVTHHGHDPQVHEDEASGMPTSYHNQFVCIPRDIVFRAPKLPAPMVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYANNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHYPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEIYIHAQKDMSTKVLNNRYRDIGQDEFLKVGRHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQ
DVTVTYNANETQYVKNNSSLEIGDNRTTKIGKNDDLDVGENSNLTVGASRSSDVGADDNQTVGGNLTVSVKGNTSYKADG
ATQIISGEKIVLKTGGSSLVMSSDGTIKLSGTSITIDGSAKVVVKGGNVAIN*

  Nucleotide sequence: 2079 bp    

>T6CP015948 NZ_BATJ01000006:21119-23197 [Vibrio proteolyticus NBRC 13287] [TssI]
ATGGTGAATGACGTAGAGTTTAAATTTGAAGTCCTCGGGACAGGACATGAGTTTCGGGTTGAGAGTTTTCAGGTAACGGA
AGAACTGTCCAAACCTTTTCATGTCAGCCTTTCATTACTTTCACTTGATGCTGATATTACATTCGATGCATTGATTCGAA
AGCCAGCTCTGTTGACCTTGTATGGTCAGGGAGCGGGCTCTGCGCGTTTGTTCCACGGTGTTGTCAACGAGGTTCGTTAT
CTGGGGCAGGGGCGACGCTTTGCACGTTATCAAGTCGTGTTGGTTCCACAGTTTTGGTTCCTGACTCAGCGTCAGGATTG
CCGTATTTTCCAACATAAAGCGGCGCCGGATATTATTTCTGAAGTGCTGGACGACGCGTCGGTGACTGACTATCGTCTGG
AGTTATCAGGGACTTACCCACCAAAAGAGTATGTGCTTCAATATCGTGAAACAGACAGCCATTTTGTTCAGCGTATGTTG
GCTGAGCATGGTATGTGGTATTACTTTGAACACACTGAAGCCAACCATACGATGGTGATCGTCGACAGCAATGACGCCAT
TGCTGAACTGCAAAGCACCCCGCTAAACGCGTCTTACATCGGTCCGATCGTTTACCATTCGGATGCTGGTGGTGTGGCTG
ACCGCGAGCACATCTTTGATCTGGAGTTGATCAATCGCGTTCGAACTGGTCACGTGACGTACACAGATTACAACTATGAA
CAGCCGAAGATCCCTCAGGAAATGGCGTCAAATGGTGACCTTGATCAGGATCTAAAACTGTTTGATTATCCGGGCCGTTA
CGGGGACCCTGCGCAAGGGCAAATTCGTGCCACGGAATGGATGGCCGATCATGTCGTAGAGAATCAGCAGATTGAGGCCT
CCAGTAACGTGATGCGCCTTACTGCGGGTTACAGTTTTAATATCGGAGAGCATCCTCGCGCGTCAATTAACCGTGATTTT
ACCATGTTGGCAGTGACTCACCATGGTCATGACCCTCAGGTTCACGAAGACGAAGCGAGCGGCATGCCAACGTCATATCA
CAACCAGTTTGTATGTATTCCTCGTGATATTGTTTTCCGGGCGCCAAAGCTGCCAGCACCTATGGTCGATGGCCCGCAGA
CGGCCGTTGTAGTGGGGCCGGCTGGAGAAGAGATTTATACCGATAAGCTTGGTCGGATTAAAGTTCAGTTCCATTGGGAT
CGTTACGCGAACAACGACGAGCATGCCAGCTGCTGGATTCGTGTCAGCCAGTCAATGGCGGCGCCAACCTGGGGTGCGGT
GTACTTGCCACGAATTGGTCACGAAGTTGTGGTTACGTTCCTGGAAGGTGATCCGGATCGTCCGTTAGTGACGGGGGCCG
TTTACAACGGTCTGCACTATCCTCCGTACTCGCTGCCGGAAAACAAAACACGGACCACTTTCCGTACTCAGACGCACAAA
GGCACTGGTTACAATGAACTGAGTTTTGAAGACGAAGCGAACCAGGAAGAGATCTATATCCATGCACAAAAGGATATGTC
GACCAAAGTCCTGAACAACCGTTATCGTGACATTGGTCAGGATGAGTTTCTCAAAGTCGGCCGTCACCAGACGAATGAAG
TCCACGGCGACCACAAAGAGACGATTGACGGGCATAAGACCACACAGGTGAACAGCACCTTTACGGAGACGGTTGAGCAA
GACGTTACCGTCACCTATAACGCCAACGAAACTCAGTACGTAAAAAATAACAGCAGCCTTGAAATTGGTGACAATCGTAC
CACCAAGATTGGTAAAAACGACGATCTGGATGTCGGTGAAAACAGCAACCTGACGGTTGGGGCTTCACGCTCTTCGGACG
TTGGTGCGGATGACAACCAAACGGTCGGCGGTAACCTGACGGTTTCCGTCAAAGGCAATACCTCATATAAGGCAGACGGG
GCCACACAGATTATCAGTGGTGAAAAAATTGTACTCAAAACCGGCGGCTCGTCGTTGGTGATGAGCAGCGACGGCACGAT
TAAACTTTCTGGTACTTCAATTACCATCGATGGCAGCGCTAAAGTGGTTGTGAAGGGTGGTAACGTAGCGATTAACTGA