Detailed information of component protein


Summary

Component ID T6CP015947
Component protein type TssD
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) VPR01S_RS08810
Coordinate (Strand) 20528..21046 (+)
NCBI ID 545468471
RefSeq NZ_BATJ01000006
Uniprot ID U3BK42_VIBPR
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 8.4e-31 6..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-172 MPTPAYMSINGETQGHITKDTFSADSVGNTWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVVVTKVQDRCSPLLFNALVSGEKLPECQIRFYRTSVQGKQEHYYTIKLIDALLVDVQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGTAGNDDWRAPREA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9654 - -



  Protein sequence: 173 a.a.    

>T6CP015947 NZ_BATJ01000006:20528-21046 [Vibrio proteolyticus NBRC 13287] [TssD]
MPTPAYMSINGETQGHITKDTFSADSVGNTWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVVVTKVQDRCSPL
LFNALVSGEKLPECQIRFYRTSVQGKQEHYYTIKLIDALLVDVQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGT
AGNDDWRAPREA*

  Nucleotide sequence: 519 bp    

>T6CP015947 NZ_BATJ01000006:20528-21046 [Vibrio proteolyticus NBRC 13287] [TssD]
ATGCCAACTCCAGCATATATGTCTATCAATGGTGAAACTCAAGGTCACATCACTAAAGATACTTTCTCTGCGGATTCTGT
CGGTAACACTTGGCAAGAAGCTCACGTAGACGAGTTTCTGGTACAAGAACTGGATCACGTTCTGACTATTCCACGTGACC
CACAAAGCGGCCAACCAACTGGTCAACGTGTTCACAAACCAGTTGTGGTAACTAAAGTTCAAGACCGTTGTTCTCCACTG
CTGTTCAACGCGTTGGTTTCTGGTGAGAAACTGCCTGAGTGTCAGATCCGTTTCTACCGTACCTCTGTACAAGGTAAGCA
AGAGCATTACTACACGATCAAACTGATCGATGCTTTGCTGGTTGACGTGCAAACTCGCATGAACCACTGTCAAGACGCTG
CAACTGCAGACCGCGTGACTGAAGAAGTTCTGAAGTTCACTTACCGTGCAATCGAAGTGACTCACGAAAACTGTGGTACT
GCGGGTAACGACGACTGGCGTGCTCCACGCGAAGCGTAA