Detailed information of component protein
Summary
| Component ID | T6CP015947 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00945  (Type i1) |
| Strain | Vibrio proteolyticus NBRC 13287 |
| Replicon | chromosome II |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VPR01S_RS08810 |
| Coordinate (Strand) | 20528..21046 (+) |
| NCBI ID | 545468471 |
| RefSeq | NZ_BATJ01000006 |
| Uniprot ID | U3BK42_VIBPR |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 8.4e-31 | 6..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPAYMSINGETQGHITKDTFSADSVGNTWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVVVTKVQDRCSPLLFNALVSGEKLPECQIRFYRTSVQGKQEHYYTIKLIDALLVDVQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGTAGNDDWRAPREA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9654 | - | - |
Protein sequence: 173 a.a.
>T6CP015947 NZ_BATJ01000006:20528-21046 [Vibrio proteolyticus NBRC 13287] [TssD]
MPTPAYMSINGETQGHITKDTFSADSVGNTWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVVVTKVQDRCSPL
LFNALVSGEKLPECQIRFYRTSVQGKQEHYYTIKLIDALLVDVQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGT
AGNDDWRAPREA*
MPTPAYMSINGETQGHITKDTFSADSVGNTWQEAHVDEFLVQELDHVLTIPRDPQSGQPTGQRVHKPVVVTKVQDRCSPL
LFNALVSGEKLPECQIRFYRTSVQGKQEHYYTIKLIDALLVDVQTRMNHCQDAATADRVTEEVLKFTYRAIEVTHENCGT
AGNDDWRAPREA*
Nucleotide sequence: 519 bp
>T6CP015947 NZ_BATJ01000006:20528-21046 [Vibrio proteolyticus NBRC 13287] [TssD]
ATGCCAACTCCAGCATATATGTCTATCAATGGTGAAACTCAAGGTCACATCACTAAAGATACTTTCTCTGCGGATTCTGT
CGGTAACACTTGGCAAGAAGCTCACGTAGACGAGTTTCTGGTACAAGAACTGGATCACGTTCTGACTATTCCACGTGACC
CACAAAGCGGCCAACCAACTGGTCAACGTGTTCACAAACCAGTTGTGGTAACTAAAGTTCAAGACCGTTGTTCTCCACTG
CTGTTCAACGCGTTGGTTTCTGGTGAGAAACTGCCTGAGTGTCAGATCCGTTTCTACCGTACCTCTGTACAAGGTAAGCA
AGAGCATTACTACACGATCAAACTGATCGATGCTTTGCTGGTTGACGTGCAAACTCGCATGAACCACTGTCAAGACGCTG
CAACTGCAGACCGCGTGACTGAAGAAGTTCTGAAGTTCACTTACCGTGCAATCGAAGTGACTCACGAAAACTGTGGTACT
GCGGGTAACGACGACTGGCGTGCTCCACGCGAAGCGTAA
ATGCCAACTCCAGCATATATGTCTATCAATGGTGAAACTCAAGGTCACATCACTAAAGATACTTTCTCTGCGGATTCTGT
CGGTAACACTTGGCAAGAAGCTCACGTAGACGAGTTTCTGGTACAAGAACTGGATCACGTTCTGACTATTCCACGTGACC
CACAAAGCGGCCAACCAACTGGTCAACGTGTTCACAAACCAGTTGTGGTAACTAAAGTTCAAGACCGTTGTTCTCCACTG
CTGTTCAACGCGTTGGTTTCTGGTGAGAAACTGCCTGAGTGTCAGATCCGTTTCTACCGTACCTCTGTACAAGGTAAGCA
AGAGCATTACTACACGATCAAACTGATCGATGCTTTGCTGGTTGACGTGCAAACTCGCATGAACCACTGTCAAGACGCTG
CAACTGCAGACCGCGTGACTGAAGAAGTTCTGAAGTTCACTTACCGTGCAATCGAAGTGACTCACGAAAACTGTGGTACT
GCGGGTAACGACGACTGGCGTGCTCCACGCGAAGCGTAA