Detailed information of component protein


Summary

Component ID T6CP015946
Component protein type TssH
T6SS ID (Type) T6SS00945 experimental (Type i1)
Strain Vibrio proteolyticus NBRC 13287
Replicon chromosome II
Sequence Protein sequence (888 a.a.); Nucleotide sequence (2664 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) VPR01S_RS08805
Coordinate (Strand) 17401..20064 (-)
NCBI ID 545468470
RefSeq NZ_BATJ01000006
Uniprot ID U3A0W6_VIBPR
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.2e-43 621..785
AAA_lid_9 PF17871.3 1.1e-30 357..451
ClpB_D2-small PF10431.11 6e-14 792..866
AAA PF00004.31 7.2e-10 220..348
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-887 MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDIDVLLAHFDCSENLLRQSIRSTLDSSPTGNGGKPVFSALLIEWLQESWLVSSLDLSETKIRTGALLLTLVSNPLRYGQHGYASILESVNPDSLKRNFAELTSQSLEAREATSEKTQAREEGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQGEVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALARGEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQLPDKAIDVLDTACARVNISLNAVPASVETLQQELAAQTRELEALERDALQQTGDKHSLATIPDLKAAMEETRAELEVQEAQWQNEKNQIEEMIALRARLHELVSDEPASETEDDQDADVSPYAEMDEEAVRIAISACQEQLEQIRGGNPLVHFEVGPDEVSHVIADWTGIPMGKVLQDEAETTLNLKDNLTQTIKGQEFAIDALAEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETARAIADQLFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDKGTLNDGEGRAIDFKNTLIIMTSNLATHEIESLVQQSKEIEAGVIAEAIRPTLNQHFKPALLARMSVLPFVPLSDDAMTDIIHHKLGKVSQRLQNHHKLTLNYDDNLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDAHTQITVSVDEQGTLSYAFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9916 - -


  Protein sequence: 888 a.a.    

>T6CP015946 NZ_BATJ01000006:c20064-17401 [Vibrio proteolyticus NBRC 13287] [TssH]
MININLSSLIQRLHPIAKVALEDAAALAVSEKANEVQIEHYLLSLLERPNSDIDVLLAHFDCSENLLRQSIRSTLDSSPT
GNGGKPVFSALLIEWLQESWLVSSLDLSETKIRTGALLLTLVSNPLRYGQHGYASILESVNPDSLKRNFAELTSQSLEAR
EATSEKTQAREEGSALSKFTTDFTGKARKGEIDPVFCRDQEIRQIVDILARRRKNNPIAVGEPGVGKTAVVEGLALKIVQ
GEVPDNLKGVELYGLDMGLLQAGASVKGEFEKRLNAVLDEVKNSPTPIILFIDEAHTLVGGGNQAGGSDAANLLKPALAR
GEVKTIAATTWSEYKKYFEKDPALARRFQLVKLDEPSPEQAALIIRGLRPAYEKSHNVYVRDDAITAAAALSARYISGRQ
LPDKAIDVLDTACARVNISLNAVPASVETLQQELAAQTRELEALERDALQQTGDKHSLATIPDLKAAMEETRAELEVQEA
QWQNEKNQIEEMIALRARLHELVSDEPASETEDDQDADVSPYAEMDEEAVRIAISACQEQLEQIRGGNPLVHFEVGPDEV
SHVIADWTGIPMGKVLQDEAETTLNLKDNLTQTIKGQEFAIDALAEGIQTAKAGLGNPDAPTGVFLLVGPSGVGKTETAR
AIADQLFGGERFMTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGMLTEAVRQRPYSVVLLDEVEKADPEVLNLFYQVFDK
GTLNDGEGRAIDFKNTLIIMTSNLATHEIESLVQQSKEIEAGVIAEAIRPTLNQHFKPALLARMSVLPFVPLSDDAMTDI
IHHKLGKVSQRLQNHHKLTLNYDDNLVEFVLGNCRLAETGARNIDAVINRQLLPQLSTQLLVHDKDDAHTQITVSVDEQG
TLSYAFS*

  Nucleotide sequence: 2664 bp    

>T6CP015946 NZ_BATJ01000006:c20064-17401 [Vibrio proteolyticus NBRC 13287] [TssH]
ATGATAAATATTAATCTCTCTTCTTTAATACAACGTCTGCACCCTATCGCAAAAGTTGCGCTAGAAGATGCAGCAGCACT
GGCTGTATCAGAAAAGGCCAATGAAGTTCAAATCGAGCACTACCTGCTTAGCCTGCTTGAACGCCCAAACAGTGATATTG
ACGTCCTGCTTGCGCATTTTGACTGTTCTGAAAACCTGCTACGCCAGTCCATTCGTTCAACACTGGATTCCAGTCCAACT
GGTAACGGCGGTAAACCTGTATTCTCGGCTCTGTTGATCGAATGGCTGCAGGAAAGCTGGCTGGTGTCGTCTCTGGATCT
TTCGGAAACTAAGATTCGTACCGGCGCCTTGCTGCTGACTCTGGTCAGTAACCCGCTGCGTTACGGCCAACACGGTTACG
CGTCGATTCTTGAAAGCGTTAACCCAGACAGCCTGAAGCGTAACTTTGCGGAACTCACGTCGCAGTCTCTGGAAGCACGT
GAAGCAACATCCGAGAAAACTCAGGCACGTGAAGAAGGCTCTGCGTTGAGCAAATTCACTACTGATTTCACCGGTAAAGC
ACGTAAAGGCGAAATCGACCCGGTATTCTGCCGTGATCAGGAAATTCGTCAGATCGTCGATATCCTCGCCCGTCGTCGCA
AAAACAACCCGATTGCCGTGGGTGAACCCGGTGTAGGTAAGACCGCGGTGGTAGAAGGCTTGGCGCTCAAAATTGTCCAG
GGCGAGGTGCCTGACAACCTGAAAGGGGTGGAACTGTACGGCCTGGATATGGGTCTGCTGCAAGCAGGCGCAAGCGTAAA
GGGCGAATTCGAAAAGCGCCTCAATGCCGTTCTGGATGAAGTAAAGAACTCACCAACACCGATTATCCTGTTCATCGATG
AAGCCCATACTCTGGTCGGCGGTGGTAATCAGGCTGGCGGCAGCGATGCAGCAAACCTGCTGAAACCCGCCCTGGCCCGC
GGTGAAGTCAAAACTATCGCAGCCACAACCTGGTCTGAGTACAAAAAGTATTTCGAAAAAGACCCGGCGCTTGCCCGTCG
TTTCCAATTAGTGAAACTCGACGAACCTTCACCGGAGCAAGCCGCACTCATCATCCGTGGTCTACGCCCGGCGTATGAAA
AATCTCACAACGTGTACGTGCGTGACGACGCAATTACTGCCGCTGCTGCTCTGTCTGCCCGTTACATTTCCGGTCGTCAA
CTGCCGGACAAAGCGATCGACGTACTCGATACCGCTTGTGCGCGTGTCAACATCAGCCTGAATGCGGTACCTGCTTCTGT
AGAAACGCTGCAACAAGAGCTGGCGGCGCAAACCCGTGAACTGGAAGCGCTGGAACGTGACGCTCTGCAACAAACAGGTG
ATAAGCATAGTCTGGCAACCATTCCTGATCTAAAAGCGGCCATGGAAGAAACCCGTGCAGAGCTGGAAGTACAGGAAGCC
CAATGGCAAAACGAAAAGAACCAGATCGAAGAGATGATCGCACTGCGTGCTCGTCTTCACGAACTGGTATCAGATGAGCC
GGCATCAGAGACAGAAGACGATCAAGACGCTGACGTTTCTCCTTACGCAGAAATGGATGAAGAAGCGGTACGCATCGCGA
TCTCGGCTTGTCAGGAACAACTTGAGCAAATTCGCGGCGGGAACCCACTGGTGCACTTTGAAGTTGGCCCTGACGAAGTC
AGCCATGTGATTGCCGACTGGACAGGCATCCCGATGGGTAAAGTGTTGCAGGATGAAGCTGAGACCACGCTGAACCTTAA
AGACAATCTGACTCAAACCATTAAAGGCCAGGAGTTTGCAATTGATGCACTGGCAGAAGGCATCCAAACCGCTAAAGCCG
GTCTGGGTAACCCAGATGCGCCTACCGGTGTCTTCCTGCTGGTTGGTCCAAGCGGTGTGGGTAAAACCGAAACTGCCCGT
GCCATCGCAGACCAGCTGTTTGGCGGTGAACGTTTCATGACCACCATCAACATGTCAGAATTCCAGGAGAAGCACACGGT
ATCTCGCCTGATCGGTTCACCTCCGGGTTATGTGGGTTACGGTGAAGGTGGTATGTTGACCGAAGCCGTCCGTCAACGCC
CATACTCTGTAGTCCTGCTGGACGAAGTAGAAAAAGCCGACCCAGAAGTACTGAATCTGTTCTATCAGGTGTTCGATAAG
GGTACGCTGAACGACGGCGAAGGTCGTGCGATCGACTTTAAAAACACCCTGATCATCATGACCAGTAATCTGGCGACGCA
TGAAATTGAATCTCTGGTTCAACAGTCAAAAGAGATCGAAGCGGGTGTGATTGCCGAAGCTATCCGCCCGACCCTGAATC
AGCACTTCAAGCCTGCTCTTCTGGCGCGTATGTCTGTTCTGCCGTTCGTGCCTCTGTCTGACGACGCCATGACCGATATT
ATCCATCATAAACTGGGTAAAGTGTCTCAGCGTCTGCAAAATCATCATAAACTGACACTGAACTATGACGACAATCTGGT
TGAGTTTGTTCTGGGTAATTGTCGTCTGGCGGAAACTGGTGCACGTAACATTGATGCCGTGATCAACCGTCAGTTGCTGC
CTCAACTGTCAACGCAGTTGCTGGTTCACGACAAAGACGATGCGCATACCCAGATCACCGTTTCTGTCGATGAACAGGGA
ACGCTGTCTTATGCGTTCAGCTAA